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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002733 through 18771 annotations produced 1 hits



split locus enhancer protein mA (HLHmbeta):

Annotation Number : CG14548
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002733
Gbrowse : chr3R:21830647-21831745 (-) // 100.0 //
Probeset : 1639900_at
Accessions : protein= NP_524505;, nucleotide= NM_079781;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007219 // Notch signaling pathway // non-traceable author sta
Interpro : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // n
FlyMine data for FBgn0002733.
BDGP gene expression has embryonic in situ data for HLHmbeta: 71 pix of staining in 26 body parts.
BioGrid reports that CG14548 interacts with CG7383 CG7659 CG18361 CG1007 CG3936 CG3936 CG4244 CG7892 CG14026 .
TRiP has 1 RNAi stocks for FBgn0002733 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 54 of 4 1.20None
Head97 ± 74 of 4 2.70Up
Eye66 ± 54 of 4 1.80Up
Thoracicoabdominal ganglion56 ± 44 of 4 1.50Up
Salivary gland27 ± 60 of 4 0.74None
Crop88 ± 24 of 4 2.40Up
Midgut73 ± 34 of 4 2.00Up
Tubule10 ± 00 of 4 0.30Down
Hindgut75 ± 64 of 4 2.10Up
Heart69 ± 44 of 4 1.88Up
Fat body17 ± 72 of 4 0.47Down
Ovary23 ± 23 of 4 0.60Down
Testis5 ± 20 of 4 0.10Down
Male accessory glands20 ± 21 of 4 0.50Down
Virgin spermatheca16 ± 00 of 4 0.46Down
Mated spermatheca23 ± 33 of 4 0.63Down
Adult carcass51 ± 24 of 4 1.40Up
Larval CNS215 ± 264 of 4 5.87Up
Larval Salivary gland18 ± 21 of 4 0.51Down
Larval midgut72 ± 54 of 4 1.97Up
Larval tubule5 ± 10 of 4 0.20Down
Larval hindgut115 ± 194 of 4 3.16Up
Larval fat body14 ± 30 of 4 0.40Down
Larval trachea894 ± 684 of 424.38Up
Larval carcass106 ± 184 of 4 2.91Up
S2 cells (growing)18 ± 12 of 4 0.50Down
Whole fly36 ± 24 of 4

Looking for FBgn0002733. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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