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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002736 through 18771 annotations produced 1 hits



Mago nashi (mago):

Annotation Number : CG9401
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002736
Gbrowse : chr2R:17016083-17017245 (+) // 100.0 //
Probeset : 1636919_at
Accessions : protein= NP_476636;, nucleotide= NM_057288;
Pathway : via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 000640
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
FlyMine data for FBgn0002736.
BDGP gene expression has embryonic in situ data for mago: 12 pix of staining in 14 body parts.
BioGrid reports that CG9401 interacts with CG4898 CG10901 CG8781 .
TRiP has 2 RNAi stocks for FBgn0002736 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002736 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 64 of 4 0.50Down
Head140 164 of 4 0.40Down
Eye100 134 of 4 0.27Down
Thoracicoabdominal ganglion166 84 of 4 0.50Down
Salivary gland228 124 of 4 0.62Down
Crop240 114 of 4 0.70Down
Midgut164 34 of 4 0.40Down
Tubule175 64 of 4 0.50Down
Hindgut160 54 of 4 0.40Down
Heart132 134 of 4 0.36Down
Fat body323 274 of 4 0.88None
Ovary760 214 of 4 2.10Up
Testis80 54 of 4 0.20Down
Male accessory glands194 104 of 4 0.50Down
Virgin spermatheca616 314 of 4 1.67Up
Mated spermatheca520 84 of 4 1.41Up
Adult carcass150 104 of 4 0.40Down
Larval CNS1114 1394 of 4 3.02Up
Larval Salivary gland635 184 of 4 1.73Up
Larval midgut188 64 of 4 0.51Down
Larval tubule263 54 of 4 0.70Down
Larval hindgut278 64 of 4 0.76None
Larval fat body258 234 of 4 0.70Down
Larval trachea340 354 of 4 0.92None
Larval carcass337 324 of 4 0.92None
S2 cells (growing)646 114 of 4 1.76Up
Whole fly368 324 of 4

Looking for FBgn0002736. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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