FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002775 through 18771 annotations produced 2 hits

male specifc lethal (msl-3):

Annotation Number : CG8631
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002775
Gbrowse : chr3L:7116309-7118623 (-) // 100.0 //
Probeset : 1630477_at
Accessions : protein= NP_523951; /// NP_729213;, nucleotide= NM_079227; /// NM_168191;
Pathway : by hyperactivation of X chromosome // non-traceable author statement /// 0009047 // dosage compensation
Interpro : by hyperactivation of X chromosome // traceable author statement /// 0016568 // chromatin modification // inferred from
FlyMine data for FBgn0002775.
BDGP gene expression has embryonic in situ data for msl-3: 4 pix of staining in 1 body parts.
BioGrid reports that CG8631 interacts with CG9506 .
TRiP has 1 RNAi stocks for FBgn0002775 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002775 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	76 ± 3	4 of 4	0.80	None
Head	58 ± 8	4 of 4	0.60	None
Eye	30 ± 1	4 of 4	0.33	Down
Thoracicoabdominal ganglion	72 ± 7	4 of 4	0.80	None
Salivary gland	126 ± 5	4 of 4	1.39	None
Crop	112 ± 8	4 of 4	1.20	None
Midgut	35 ± 4	4 of 4	0.40	Down
Tubule	22 ± 1	4 of 4	0.20	Down
Hindgut	100 ± 3	4 of 4	1.10	None
Heart	24 ± 2	4 of 4	0.27	Down
Fat body	48 ± 10	4 of 4	0.54	Down
Ovary	269 ± 9	4 of 4	3.00	Up
Testis	9 ± 1	4 of 4	0.10	Down
Male accessory glands	53 ± 2	4 of 4	0.60	None
Virgin spermatheca	18 ± 2	4 of 4	0.21	Down
Mated spermatheca	27 ± 1	4 of 4	0.31	Down
Adult carcass	57 ± 2	4 of 4	0.60	None
Larval CNS	227 ± 20	4 of 4	2.51	Up
Larval Salivary gland	59 ± 1	4 of 4	0.66	None
Larval midgut	36 ± 2	4 of 4	0.41	Down
Larval tubule	30 ± 4	4 of 4	0.30	Down
Larval hindgut	72 ± 6	4 of 4	0.80	None
Larval fat body	19 ± 1	4 of 4	0.20	Down
Larval trachea	68 ± 6	4 of 4	0.76	None
Larval carcass	103 ± 14	4 of 4	1.14	None
S2 cells (growing)	49 ± 3	4 of 4	0.54	Down
Whole fly	90 ± 13	4 of 4

male specifc lethal (msl-3):

Annotation Number : CG8631
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002775
Gbrowse : chr3L:7116570-7118580 (-) // 100.0 //
Probeset : 1627738_a_at
Accessions : protein= NP_523951; /// NP_729213;, nucleotide= NM_079227; /// NM_168191;
Pathway : by hyperactivation of X chromosome // non-traceable author statement /// 0009047 // dosage compensation
Interpro : by hyperactivation of X chromosome // traceable author statement /// 0016568 // chromatin modification // inferred from
FlyMine data for FBgn0002775.
BDGP gene expression has embryonic in situ data for msl-3: 4 pix of staining in 1 body parts.
BioGrid reports that CG8631 interacts with CG9506 .
TRiP has 1 RNAi stocks for FBgn0002775 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002775 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	40 ± 2	4 of 4	0.80	None
Head	21 ± 1	4 of 4	0.40	Down
Eye	30 ± 2	4 of 4	0.58	Down
Thoracicoabdominal ganglion	30 ± 1	4 of 4	0.60	Down
Salivary gland	28 ± 6	2 of 4	0.54	Down
Crop	34 ± 1	4 of 4	0.70	Down
Midgut	32 ± 0	4 of 4	0.60	Down
Tubule	28 ± 1	4 of 4	0.50	Down
Hindgut	24 ± 3	3 of 4	0.50	Down
Heart	20 ± 0	4 of 4	0.39	Down
Fat body	20 ± 6	4 of 4	0.39	Down
Ovary	111 ± 8	4 of 4	2.20	Up
Testis	95 ± 1	4 of 4	1.80	Up
Male accessory glands	34 ± 6	4 of 4	0.70	None
Virgin spermatheca	18 ± 1	2 of 4	0.36	Down
Mated spermatheca	14 ± 1	3 of 4	0.27	Down
Adult carcass	19 ± 3	3 of 4	0.40	Down
Larval CNS	82 ± 12	4 of 4	1.59	Up
Larval Salivary gland	48 ± 3	4 of 4	0.93	None
Larval midgut	23 ± 1	0 of 4	0.46	Down
Larval tubule	30 ± 2	4 of 4	0.60	Down
Larval hindgut	28 ± 1	4 of 4	0.54	Down
Larval fat body	47 ± 4	4 of 4	0.90	None
Larval trachea	41 ± 4	4 of 4	0.81	None
Larval carcass	23 ± 3	3 of 4	0.45	Down
S2 cells (growing)	61 ± 4	4 of 4	1.18	None
Whole fly	51 ± 3	4 of 4

Looking for FBgn0002775. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720