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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002778 through 18771 annotations produced 1 hits



minidiscs (mnd):

Annotation Number : CG3297
Flybase ID : FBgn0002778
Gbrowse : chr3L:14978214-14984770 (+) // 100.0 //
Probeset : 1628947_s_at
Accessions : protein= NP_524074; /// NP_730005; /// NP_730006;, nucleotide= NM_079350; /// NM_168600; /// NM_168601;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015171
FlyMine data for FBgn0002778.
BDGP gene expression has embryonic in situ data for mnd: 28 pix of staining in 14 body parts.
Homophila reports that CG3297 is a close match (3e-86) to human gene CSNU3;SLC7A9 (NP_055085), a gene associated with Cystinuria, type II (3);Cystinuria, type III (3).
BioGrid reports that CG3297 interacts with CG3668 CG4334 CG9986 Dmel CG14425 .
VDRC has 2 RNAi stocks for FBgn0002778 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain393 84 of 4 1.50Up
Head165 44 of 4 0.60Down
Eye88 104 of 4 0.34Down
Thoracicoabdominal ganglion686 134 of 4 2.60Up
Salivary gland193 74 of 4 0.74Down
Crop14 14 of 4 0.10Down
Midgut29 24 of 4 0.10Down
Tubule1106 224 of 4 4.20Up
Hindgut46 14 of 4 0.20Down
Heart188 134 of 4 0.72Down
Fat body681 494 of 4 2.60Up
Ovary485 144 of 4 1.80Up
Testis22 14 of 4 0.10Down
Male accessory glands30 34 of 4 0.10Down
Virgin spermatheca526 174 of 4 2.01Up
Mated spermatheca679 104 of 4 2.59Up
Adult carcass242 184 of 4 0.90None
Larval CNS476 394 of 4 1.82Up
Larval Salivary gland258 44 of 4 0.99None
Larval midgut39 34 of 4 0.15Down
Larval tubule211 134 of 4 0.80Down
Larval hindgut43 44 of 4 0.16Down
Larval fat body47 84 of 4 0.20Down
Larval trachea96 204 of 4 0.37Down
Larval carcass297 394 of 4 1.13None
S2 cells (growing)717 184 of 4 2.73Up
Whole fly262 144 of 4

Looking for FBgn0002778. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime