FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002778 through 18771 annotations produced 1 hits

minidiscs (mnd):

Annotation Number : CG3297
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002778
Gbrowse : chr3L:14978214-14984770 (+) // 100.0 //
Probeset : 1628947_s_at
Accessions : protein= NP_524074; /// NP_730005; /// NP_730006;, nucleotide= NM_079350; /// NM_168600; /// NM_168601;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015171
FlyMine data for FBgn0002778.
BDGP gene expression has embryonic in situ data for mnd: 28 pix of staining in 14 body parts.
Homophila reports that CG3297 is a close match (3e-86) to human gene CSNU3;SLC7A9 (NP_055085), a gene associated with Cystinuria, type II (3);Cystinuria, type III (3).
BioGrid reports that CG3297 interacts with CG3668 CG4334 CG9986 Dmel CG14425 .
VDRC has 2 RNAi stocks for FBgn0002778 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	393 ± 8	4 of 4	1.50	Up
Head	165 ± 4	4 of 4	0.60	Down
Eye	88 ± 10	4 of 4	0.34	Down
Thoracicoabdominal ganglion	686 ± 13	4 of 4	2.60	Up
Salivary gland	193 ± 7	4 of 4	0.74	Down
Crop	14 ± 1	4 of 4	0.10	Down
Midgut	29 ± 2	4 of 4	0.10	Down
Tubule	1106 ± 22	4 of 4	4.20	Up
Hindgut	46 ± 1	4 of 4	0.20	Down
Heart	188 ± 13	4 of 4	0.72	Down
Fat body	681 ± 49	4 of 4	2.60	Up
Ovary	485 ± 14	4 of 4	1.80	Up
Testis	22 ± 1	4 of 4	0.10	Down
Male accessory glands	30 ± 3	4 of 4	0.10	Down
Virgin spermatheca	526 ± 17	4 of 4	2.01	Up
Mated spermatheca	679 ± 10	4 of 4	2.59	Up
Adult carcass	242 ± 18	4 of 4	0.90	None
Larval CNS	476 ± 39	4 of 4	1.82	Up
Larval Salivary gland	258 ± 4	4 of 4	0.99	None
Larval midgut	39 ± 3	4 of 4	0.15	Down
Larval tubule	211 ± 13	4 of 4	0.80	Down
Larval hindgut	43 ± 4	4 of 4	0.16	Down
Larval fat body	47 ± 8	4 of 4	0.20	Down
Larval trachea	96 ± 20	4 of 4	0.37	Down
Larval carcass	297 ± 39	4 of 4	1.13	None
S2 cells (growing)	717 ± 18	4 of 4	2.73	Up
Whole fly	262 ± 14	4 of 4

Looking for FBgn0002778. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720