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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002787 through 18771 annotations produced 1 hits



chr2R:20290493-20292050 (+) // 100.0 // (Mov34):

Annotation Number : CG3416
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635259_at
Accessions : protein= , nucleotide= NP_523845;
Pathway : 0000022 // mitotic spindle elongation // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from dire
Interpro : "0000502 // proteasome complex // inferred from direct assay /// 0000502 // proteasome complex // non-traceable author s
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain305 74 of 4 0.60Down
Head296 94 of 4 0.60Down
Eye300 164 of 4 0.61Down
Thoracicoabdominal ganglion311 154 of 4 0.60Down
Salivary gland364 134 of 4 0.74Down
Crop595 114 of 4 1.20Up
Midgut428 104 of 4 0.90Down
Tubule421 314 of 4 0.90Down
Hindgut417 64 of 4 0.80Down
Heart784 194 of 4 1.60Up
Fat body631 374 of 4 1.29Up
Ovary676 84 of 4 1.40Up
Testis426 74 of 4 0.90Down
Male accessory glands305 54 of 4 0.60Down
Virgin spermatheca387 44 of 4 0.79Down
Mated spermatheca384 174 of 4 0.78Down
Adult carcass528 234 of 4 1.10None
Larval CNS650 364 of 4 1.33Up
Larval Salivary gland723 394 of 4 1.47Up
Larval midgut739 744 of 4 1.51Up
Larval tubule1196 164 of 4 2.40Up
Larval hindgut741 504 of 4 1.51Up
Larval fat body438 334 of 4 0.90None
Larval trachea543 494 of 4 1.11None
Larval carcass1282 1414 of 4 2.61Up
S2 cells (growing)493 24 of 4 1.01None
Whole fly490 134 of 4

Looking for FBgn0002787. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime