FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002787 through 18771 annotations produced 1 hits

chr2R:20290493-20292050 (+) // 100.0 // (Mov34):

Annotation Number : CG3416
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635259_at
Accessions : protein= , nucleotide= NP_523845;
Pathway : 0000022 // mitotic spindle elongation // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from dire
Interpro : "0000502 // proteasome complex // inferred from direct assay /// 0000502 // proteasome complex // non-traceable author s
FlyMine data for full length.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	305 ± 7	4 of 4	0.60	Down
Head	296 ± 9	4 of 4	0.60	Down
Eye	300 ± 16	4 of 4	0.61	Down
Thoracicoabdominal ganglion	311 ± 15	4 of 4	0.60	Down
Salivary gland	364 ± 13	4 of 4	0.74	Down
Crop	595 ± 11	4 of 4	1.20	Up
Midgut	428 ± 10	4 of 4	0.90	Down
Tubule	421 ± 31	4 of 4	0.90	Down
Hindgut	417 ± 6	4 of 4	0.80	Down
Heart	784 ± 19	4 of 4	1.60	Up
Fat body	631 ± 37	4 of 4	1.29	Up
Ovary	676 ± 8	4 of 4	1.40	Up
Testis	426 ± 7	4 of 4	0.90	Down
Male accessory glands	305 ± 5	4 of 4	0.60	Down
Virgin spermatheca	387 ± 4	4 of 4	0.79	Down
Mated spermatheca	384 ± 17	4 of 4	0.78	Down
Adult carcass	528 ± 23	4 of 4	1.10	None
Larval CNS	650 ± 36	4 of 4	1.33	Up
Larval Salivary gland	723 ± 39	4 of 4	1.47	Up
Larval midgut	739 ± 74	4 of 4	1.51	Up
Larval tubule	1196 ± 16	4 of 4	2.40	Up
Larval hindgut	741 ± 50	4 of 4	1.51	Up
Larval fat body	438 ± 33	4 of 4	0.90	None
Larval trachea	543 ± 49	4 of 4	1.11	None
Larval carcass	1282 ± 141	4 of 4	2.61	Up
S2 cells (growing)	493 ± 2	4 of 4	1.01	None
Whole fly	490 ± 13	4 of 4

Looking for FBgn0002787. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720