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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002789 through 18771 annotations produced 1 hits



myophilin (Mp20):

Annotation Number : CG4696
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002789
Gbrowse : chr2R:9134156-9135278 (+) // 100.0 //
Probeset : 1630509_at
Accessions : protein= NP_001014522; /// NP_476643;, nucleotide= NM_001014522; /// NM_057295;
Pathway : 0043292 // contractile fiber // non-traceable author statement
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferr
FlyMine data for FBgn0002789.
BDGP gene expression has embryonic in situ data for Mp20: 14 pix of staining in 5 body parts.
BioGrid reports that CG4696 interacts with CG4938 CG4963 CG7357 .
TRiP has 1 RNAi stocks for FBgn0002789 available for purchase.
VDRC has 4 RNAi stocks for FBgn0002789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 54 of 4 0.10Down
Head814 ± 704 of 4 0.90None
Eye328 ± 664 of 4 0.38Down
Thoracicoabdominal ganglion46 ± 103 of 4 0.10Down
Salivary gland49 ± 161 of 4 0.06Down
Crop6493 ± 4304 of 4 7.50Up
Midgut1573 ± 344 of 4 1.80Up
Tubule105 ± 114 of 4 0.10Down
Hindgut3547 ± 304 of 4 4.10Up
Heart4461 ± 2494 of 4 5.15Up
Fat body346 ± 864 of 4 0.40Down
Ovary142 ± 94 of 4 0.20Down
Testis158 ± 74 of 4 0.20Down
Male accessory glands888 ± 374 of 4 1.00None
Virgin spermatheca172 ± 154 of 4 0.20Down
Mated spermatheca278 ± 274 of 4 0.32Down
Adult carcass2603 ± 1454 of 4 3.00Up
Larval CNS69 ± 184 of 4 0.08Down
Larval Salivary gland48 ± 34 of 4 0.06Down
Larval midgut1345 ± 384 of 4 1.55Up
Larval tubule152 ± 144 of 4 0.20Down
Larval hindgut3884 ± 554 of 4 4.48Up
Larval fat body22 ± 41 of 4 0.00Down
Larval trachea1131 ± 5744 of 4 1.31None
Larval carcass5045 ± 4254 of 4 5.82Up
S2 cells (growing)4 ± 20 of 4 0.01Down
Whole fly866 ± 614 of 4

Looking for FBgn0002789. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime