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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002791 through 18771 annotations produced 1 hits



morula (mr):

Annotation Number : CG3060
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002791
Gbrowse : chr2R:19859955-19862935 (+) // 100.0 //
Probeset : 1635875_at
Accessions : protein= NP_611862;, nucleotide= NM_138018;
Pathway : 0005680 // anaphase-promoting complex // non-traceable author statement /// 0005680 // anaphase-promoting complex // tra
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // infe
FlyMine data for FBgn0002791.
BioGrid reports that CG3060 interacts with CG6521 CG3942 CG4617 CG8854 CG3510 .
TRiP has 1 RNAi stocks for FBgn0002791 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002791 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 ± 14 of 4 1.00None
Head49 ± 44 of 4 0.60Down
Eye61 ± 44 of 4 0.71Down
Thoracicoabdominal ganglion100 ± 64 of 4 1.20None
Salivary gland66 ± 63 of 4 0.77Down
Crop66 ± 44 of 4 0.80Down
Midgut43 ± 14 of 4 0.50Down
Tubule57 ± 14 of 4 0.70Down
Hindgut51 ± 24 of 4 0.60Down
Heart51 ± 44 of 4 0.59Down
Fat body44 ± 24 of 4 0.51Down
Ovary165 ± 54 of 4 1.90Up
Testis214 ± 84 of 4 2.50Up
Male accessory glands82 ± 44 of 4 0.90None
Virgin spermatheca58 ± 24 of 4 0.67Down
Mated spermatheca61 ± 24 of 4 0.71Down
Adult carcass41 ± 64 of 4 0.50Down
Larval CNS181 ± 44 of 4 2.10Up
Larval Salivary gland59 ± 44 of 4 0.68Down
Larval midgut43 ± 14 of 4 0.50Down
Larval tubule51 ± 14 of 4 0.60Down
Larval hindgut62 ± 44 of 4 0.72Down
Larval fat body62 ± 154 of 4 0.70None
Larval trachea109 ± 144 of 4 1.27Up
Larval carcass59 ± 34 of 4 0.69Down
S2 cells (growing)110 ± 64 of 4 1.27Up
Whole fly86 ± 24 of 4

Looking for FBgn0002791. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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