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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002842 through 18771 annotations produced 1 hits



spermatocyte arrest (sa):

Annotation Number : CG11308
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002842
Gbrowse : chr3L:21398610-21399796 (-) // 100.0 //
Probeset : 1632138_at
Accessions : protein= NP_649311;, nucleotide= NM_141054;
Pathway : 0005730 // nucleolus // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0002842.
BioGrid reports that CG11308 interacts with CG2082 CG3069 CG32685 .
TRiP has 3 RNAi stocks for FBgn0002842 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002842 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.14Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.30Down
Salivary gland3 ± 10 of 4 0.22Down
Crop3 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.04Down
Fat body1 ± 00 of 4 0.06Down
Ovary2 ± 10 of 4 0.10Down
Testis254 ± 54 of 416.10Up
Male accessory glands8 ± 20 of 4 0.50None
Virgin spermatheca3 ± 20 of 4 0.21Down
Mated spermatheca1 ± 00 of 4 0.08Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.09Down
Larval Salivary gland3 ± 10 of 4 0.24Down
Larval midgut3 ± 10 of 4 0.21Down
Larval tubule4 ± 10 of 4 0.30Down
Larval hindgut4 ± 20 of 4 0.29Down
Larval fat body45 ± 192 of 4 2.90None
Larval trachea2 ± 10 of 4 0.14Down
Larval carcass1 ± 00 of 4 0.12Down
S2 cells (growing)1 ± 00 of 4 0.10Down
Whole fly15 ± 11 of 4

Looking for FBgn0002842. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime