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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002868 through 18771 annotations produced 1 hits



metallothionein N (MtnA):

Annotation Number : CG9470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002868
Gbrowse : chr3R:5609486-5610093 (-) // 100.0 //
Probeset : 1632873_at
Accessions : protein= NP_524299;, nucleotide= NM_079575;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from elect
FlyMine data for FBgn0002868.
VDRC has 4 RNAi stocks for FBgn0002868 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4017 524 of 4 0.80None
Head4968 3264 of 4 0.90None
Eye5763 4104 of 4 1.09None
Thoracicoabdominal ganglion4902 474 of 4 0.90None
Salivary gland10073 5164 of 4 1.91Up
Crop1079 1844 of 4 0.20Down
Midgut7424 2964 of 4 1.40Up
Tubule8783 2364 of 4 1.70Up
Hindgut6717 1884 of 4 1.30Up
Heart8527 7604 of 4 1.62Up
Fat body6064 11944 of 4 1.15None
Ovary494 204 of 4 0.10Down
Testis4030 1824 of 4 0.80None
Male accessory glands3195 3274 of 4 0.60Down
Virgin spermatheca5880 1904 of 4 1.12None
Mated spermatheca5883 3394 of 4 1.12None
Adult carcass8526 3114 of 4 1.60Up
Larval CNS2917 1964 of 4 0.55Down
Larval Salivary gland72 74 of 4 0.01Down
Larval midgut6261 1194 of 4 1.19None
Larval tubule7460 3374 of 4 1.40Up
Larval hindgut4358 2464 of 4 0.83None
Larval fat body1537 9724 of 4 0.30Down
Larval trachea361 2774 of 4 0.07Down
Larval carcass1315 2234 of 4 0.25Down
S2 cells (growing)1870 374 of 4 0.36Down
Whole fly5263 4744 of 4

Looking for FBgn0002868. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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