FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002868 through 18771 annotations produced 1 hits

metallothionein N (MtnA):

Annotation Number : CG9470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002868
Gbrowse : chr3R:5609486-5610093 (-) // 100.0 //
Probeset : 1632873_at
Accessions : protein= NP_524299;, nucleotide= NM_079575;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from elect
FlyMine data for FBgn0002868.
VDRC has 4 RNAi stocks for FBgn0002868 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4017 ± 52	4 of 4	0.80	None
Head	4968 ± 326	4 of 4	0.90	None
Eye	5763 ± 410	4 of 4	1.09	None
Thoracicoabdominal ganglion	4902 ± 47	4 of 4	0.90	None
Salivary gland	10073 ± 516	4 of 4	1.91	Up
Crop	1079 ± 184	4 of 4	0.20	Down
Midgut	7424 ± 296	4 of 4	1.40	Up
Tubule	8783 ± 236	4 of 4	1.70	Up
Hindgut	6717 ± 188	4 of 4	1.30	Up
Heart	8527 ± 760	4 of 4	1.62	Up
Fat body	6064 ± 1194	4 of 4	1.15	None
Ovary	494 ± 20	4 of 4	0.10	Down
Testis	4030 ± 182	4 of 4	0.80	None
Male accessory glands	3195 ± 327	4 of 4	0.60	Down
Virgin spermatheca	5880 ± 190	4 of 4	1.12	None
Mated spermatheca	5883 ± 339	4 of 4	1.12	None
Adult carcass	8526 ± 311	4 of 4	1.60	Up
Larval CNS	2917 ± 196	4 of 4	0.55	Down
Larval Salivary gland	72 ± 7	4 of 4	0.01	Down
Larval midgut	6261 ± 119	4 of 4	1.19	None
Larval tubule	7460 ± 337	4 of 4	1.40	Up
Larval hindgut	4358 ± 246	4 of 4	0.83	None
Larval fat body	1537 ± 972	4 of 4	0.30	Down
Larval trachea	361 ± 277	4 of 4	0.07	Down
Larval carcass	1315 ± 223	4 of 4	0.25	Down
S2 cells (growing)	1870 ± 37	4 of 4	0.36	Down
Whole fly	5263 ± 474	4 of 4

Looking for FBgn0002868. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720