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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002869 through 18771 annotations produced 1 hits



Metallothionein B (MtnB):

Annotation Number : CG4312
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002869
Gbrowse : chr3R:16328959-16329321 (-) // 100.0 //
Probeset : 1630291_at
Accessions : protein= NP_524413;, nucleotide= NM_079689;
Interpro : 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical int
FlyMine data for FBgn0002869.
BioGrid reports that CG4312 interacts with CG5893 .
VDRC has 1 RNAi stocks for FBgn0002869 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 21 of 4 0.00Down
Head60 ± 64 of 4 0.20Down
Eye16 ± 51 of 4 0.06Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland4 ± 20 of 4 0.02Down
Crop3 ± 10 of 4 0.00Down
Midgut3135 ± 4834 of 412.00Up
Tubule10 ± 00 of 4 0.00Down
Hindgut25 ± 52 of 4 0.10Down
Heart2136 ± 8464 of 4 8.19None
Fat body20 ± 40 of 4 0.08Down
Ovary4 ± 20 of 4 0.00Down
Testis18 ± 13 of 4 0.10Down
Male accessory glands7 ± 30 of 4 0.00Down
Virgin spermatheca7 ± 30 of 4 0.03Down
Mated spermatheca13 ± 30 of 4 0.05Down
Adult carcass65 ± 73 of 4 0.30Down
Larval CNS2 ± 20 of 4 0.01Down
Larval Salivary gland2 ± 10 of 4 0.01Down
Larval midgut2267 ± 1834 of 4 8.70Up
Larval tubule58 ± 372 of 4 0.20Down
Larval hindgut108 ± 793 of 4 0.41None
Larval fat body7 ± 20 of 4 0.00Down
Larval trachea8 ± 10 of 4 0.03Down
Larval carcass15 ± 31 of 4 0.06Down
S2 cells (growing)5 ± 10 of 4 0.02Down
Whole fly260 ± 374 of 4

Looking for FBgn0002869. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime