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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002878 through 18771 annotations produced 1 hits



mutagen-sensitive 101 (mus101):

Annotation Number : CG11156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002878
Gbrowse : chrX:13616321-13621145 (+) // 100.0 //
Probeset : 1635302_at
Accessions : protein= NP_524909;, nucleotide= NM_080170;
Pathway : 0005622 // intracellular // inferred from electronic annotation
FlyMine data for FBgn0002878.
BioGrid reports that CG11156 interacts with CG30089 CG13001 .
VDRC has 2 RNAi stocks for FBgn0002878 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 24 of 4 0.40Down
Head6 ± 11 of 4 0.10Down
Eye8 ± 00 of 4 0.17Down
Thoracicoabdominal ganglion9 ± 13 of 4 0.20Down
Salivary gland8 ± 10 of 4 0.17Down
Crop8 ± 11 of 4 0.20Down
Midgut7 ± 12 of 4 0.20Down
Tubule4 ± 00 of 4 0.10Down
Hindgut7 ± 03 of 4 0.20Down
Heart16 ± 34 of 4 0.34Down
Fat body27 ± 64 of 4 0.58Down
Ovary105 ± 24 of 4 2.20Up
Testis14 ± 14 of 4 0.30Down
Male accessory glands11 ± 10 of 4 0.20Down
Virgin spermatheca6 ± 12 of 4 0.13Down
Mated spermatheca6 ± 11 of 4 0.14Down
Adult carcass8 ± 10 of 4 0.20Down
Larval CNS46 ± 34 of 4 0.97None
Larval Salivary gland24 ± 43 of 4 0.51Down
Larval midgut7 ± 00 of 4 0.15Down
Larval tubule6 ± 00 of 4 0.10Down
Larval hindgut20 ± 34 of 4 0.42Down
Larval fat body10 ± 21 of 4 0.20Down
Larval trachea13 ± 14 of 4 0.29Down
Larval carcass18 ± 23 of 4 0.38Down
S2 cells (growing)40 ± 54 of 4 0.84None
Whole fly47 ± 14 of 4

Looking for FBgn0002878. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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