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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002887 through 18771 annotations produced 2 hits



Chrac-14 /// mutagen-sensitive 201 (Chrac-14 /// mus201):

Annotation Number : CG32956
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002887 /// FBgn0043002
Gbrowse : chr2L:8437410-8437998 (+) // 100.0 //
Probeset : 1626280_a_at
Accessions : protein= NP_001027230; /// NP_001027231; /// NP_001027232; /// NP_476646; /// NP_476647;, nucleotide= NM_001032059; /// NM_001032060; /// NM_001032061; /// NM_057298; /// NM_057299;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // inferred from sequence or structural similarit
FlyMine data for FBgn0002887 /// FBgn0043002.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 14 of 4 0.30Down
Head56 14 of 4 0.20Down
Eye74 44 of 4 0.27Down
Thoracicoabdominal ganglion67 24 of 4 0.20Down
Salivary gland39 64 of 4 0.14Down
Crop54 44 of 4 0.20Down
Midgut94 24 of 4 0.30Down
Tubule46 14 of 4 0.20Down
Hindgut84 44 of 4 0.30Down
Heart47 14 of 4 0.17Down
Fat body36 34 of 4 0.13Down
Ovary604 74 of 4 2.20Up
Testis14 24 of 4 0.10Down
Male accessory glands13 20 of 4 0.00Down
Virgin spermatheca30 34 of 4 0.11Down
Mated spermatheca26 44 of 4 0.09Down
Adult carcass47 24 of 4 0.20Down
Larval CNS393 54 of 4 1.42Up
Larval Salivary gland37 23 of 4 0.13Down
Larval midgut53 64 of 4 0.19Down
Larval tubule81 94 of 4 0.30Down
Larval hindgut96 54 of 4 0.35Down
Larval fat body45 24 of 4 0.20Down
Larval trachea171 184 of 4 0.62Down
Larval carcass52 44 of 4 0.19Down
S2 cells (growing)311 134 of 4 1.12None
Whole fly276 84 of 4



Chrac-14 /// mutagen-sensitive 201 (Chrac-14 /// mus201):

Annotation Number : CG32956
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002887 /// FBgn0043002
Gbrowse : chr2L:8437410-8442352 (+) // 100.0 //
Probeset : 1637542_s_at
Accessions : protein= NP_001027230; /// NP_001027231; /// NP_001027232; /// NP_476646; /// NP_476647;, nucleotide= NM_001032059; /// NM_001032060; /// NM_001032061; /// NM_057298; /// NM_057299;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // inferred from sequence or structural similarit
FlyMine data for FBgn0002887 /// FBgn0043002.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 04 of 4 1.20None
Head26 14 of 4 0.50Down
Eye18 14 of 4 0.37Down
Thoracicoabdominal ganglion57 24 of 4 1.10None
Salivary gland20 41 of 4 0.40Down
Crop31 34 of 4 0.60Down
Midgut29 43 of 4 0.60Down
Tubule25 44 of 4 0.50Down
Hindgut21 14 of 4 0.40Down
Heart18 14 of 4 0.36Down
Fat body24 34 of 4 0.47Down
Ovary127 54 of 4 2.50Up
Testis72 24 of 4 1.40Up
Male accessory glands18 11 of 4 0.40Down
Virgin spermatheca29 24 of 4 0.59Down
Mated spermatheca29 24 of 4 0.58Down
Adult carcass21 13 of 4 0.40Down
Larval CNS79 54 of 4 1.58Up
Larval Salivary gland31 24 of 4 0.62Down
Larval midgut22 04 of 4 0.45Down
Larval tubule28 24 of 4 0.60Down
Larval hindgut23 14 of 4 0.47Down
Larval fat body43 24 of 4 0.90None
Larval trachea23 34 of 4 0.46Down
Larval carcass19 14 of 4 0.39Down
S2 cells (growing)45 14 of 4 0.89None
Whole fly50 34 of 4

Looking for FBgn0002887. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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