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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002891 through 18771 annotations produced 1 hits



mutagen-sensitive 205 (mus205):

Annotation Number : CG1925
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002891
Gbrowse : chr2R:3680756-3688549 (+) // 100.0 //
Probeset : 1631822_at
Accessions : protein= NP_524881;, nucleotide= NM_080142;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006260 // DNA replication //
FlyMine data for FBgn0002891.
BioGrid reports that CG1925 interacts with CG1999 CG3668 CG8287 CG9930 .
VDRC has 2 RNAi stocks for FBgn0002891 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 14 of 4 0.80None
Head43 14 of 4 0.60Down
Eye37 44 of 4 0.52Down
Thoracicoabdominal ganglion73 14 of 4 1.00None
Salivary gland80 84 of 4 1.11None
Crop68 54 of 4 0.90None
Midgut43 24 of 4 0.60Down
Tubule51 34 of 4 0.70Down
Hindgut77 34 of 4 1.10None
Heart41 24 of 4 0.58Down
Fat body59 44 of 4 0.82None
Ovary143 24 of 4 2.00Up
Testis43 24 of 4 0.60Down
Male accessory glands39 44 of 4 0.50Down
Virgin spermatheca48 24 of 4 0.66Down
Mated spermatheca49 14 of 4 0.68None
Adult carcass51 14 of 4 0.70None
Larval CNS81 84 of 4 1.12None
Larval Salivary gland52 24 of 4 0.72None
Larval midgut45 14 of 4 0.63Down
Larval tubule57 24 of 4 0.80None
Larval hindgut59 44 of 4 0.82None
Larval fat body42 34 of 4 0.60Down
Larval trachea62 74 of 4 0.87None
Larval carcass60 34 of 4 0.84None
S2 cells (growing)91 24 of 4 1.26None
Whole fly72 74 of 4

Looking for FBgn0002891. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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