Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002909 through 18771 annotations produced 1 hits



/// mutagen-sensitive 312 (CG42307 /// mus312):

Annotation Number : CG8601
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002909 /// FBgn0259203
Gbrowse : chr3L:7322242-7326571 (+) // 100.0 //
Probeset : 1629113_a_at
Accessions : protein= NP_001137899; /// NP_001137900; /// NP_001137901; /// NP_001137902; /// NP_648104;, nucleotide= NM_001144427; /// NM_001144428; /// NM_001144429; /// NM_001144430; /// NM_139847;
Pathway : DNA damage recognition // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotati
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0033557 // Slx1-Slx4 complex // inferred from direct assay
FlyMine data for FBgn0002909 /// FBgn0259203.
BioGrid reports that CG8601 interacts with CG8942 CG3697 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 24 of 4 1.00None
Head38 24 of 4 0.60Down
Eye34 44 of 4 0.58Down
Thoracicoabdominal ganglion57 54 of 4 0.90None
Salivary gland62 73 of 4 1.04None
Crop47 24 of 4 0.80Down
Midgut28 24 of 4 0.50Down
Tubule52 24 of 4 0.90Down
Hindgut45 44 of 4 0.70Down
Heart29 24 of 4 0.49Down
Fat body33 64 of 4 0.56Down
Ovary128 24 of 4 2.10Up
Testis82 14 of 4 1.40Up
Male accessory glands28 33 of 4 0.50Down
Virgin spermatheca50 14 of 4 0.83Down
Mated spermatheca51 14 of 4 0.85Down
Adult carcass43 24 of 4 0.70Down
Larval CNS82 64 of 4 1.36Up
Larval Salivary gland58 64 of 4 0.97None
Larval midgut37 14 of 4 0.61Down
Larval tubule60 34 of 4 1.00None
Larval hindgut51 34 of 4 0.86None
Larval fat body41 93 of 4 0.70None
Larval trachea65 64 of 4 1.09None
Larval carcass62 34 of 4 1.03None
S2 cells (growing)82 14 of 4 1.37Up
Whole fly60 14 of 4

Looking for FBgn0002909. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime