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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002917 through 18771 annotations produced 1 hits



halothane-resistant (na):

Annotation Number : CG1517
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002917
Gbrowse : chrX:14161685-14170664 (+) // 100.0 //
Probeset : 1635546_a_at
Accessions : protein= NP_001096981;, nucleotide= NM_001103511;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from mutant phenotype /// 0005216 // ion channel activity // inferred from e
FlyMine data for FBgn0002917.
Homophila reports that CG1517 is a close match (7e-20) to human gene CACNA1H;EIG6 (NP_066921), a gene associated with {Epilepsy, idiopathic generalized, susceptibility to, 6}, 611942 (3).
TRiP has 1 RNAi stocks for FBgn0002917 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002917 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 24 of 414.30Up
Head3 10 of 4 2.40None
Eye7 01 of 4 5.70Up
Thoracicoabdominal ganglion22 24 of 418.30Up
Salivary gland2 10 of 4 1.84None
Crop0 00 of 4 0.70None
Midgut2 00 of 4 1.60None
Tubule1 00 of 4 1.40None
Hindgut1 00 of 4 0.80None
Heart0 00 of 4 0.50None
Fat body1 00 of 4 1.08None
Ovary1 10 of 4 1.40None
Testis2 00 of 4 1.60None
Male accessory glands2 10 of 4 1.90None
Virgin spermatheca1 00 of 4 1.52None
Mated spermatheca1 00 of 4 0.96None
Adult carcass2 00 of 4 2.30None
Larval CNS3 20 of 4 2.80None
Larval Salivary gland0 00 of 4 0.50None
Larval midgut2 10 of 4 2.28None
Larval tubule0 00 of 4 0.60None
Larval hindgut1 00 of 4 1.22None
Larval fat body1 00 of 4 1.50None
Larval trachea1 00 of 4 0.92None
Larval carcass3 10 of 4 2.82None
S2 cells (growing)0 00 of 4 0.52None
Whole fly1 00 of 4

Looking for FBgn0002917. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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