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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002924 through 18771 annotations produced 1 hits



non-claret disjunctional (ncd):

Annotation Number : CG7831
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002924
Gbrowse : chr3R:25630020-25632849 (-) // 100.0 //
Probeset : 1637264_at
Accessions : protein= NP_476651;, nucleotide= NM_057303;
Pathway : 0005819 // spindle // inferred from direct assay /// 0005871 // kinesin complex // inferred from sequence or structural
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from elec
FlyMine data for FBgn0002924.
BDGP gene expression has embryonic in situ data for ncd: 13 pix of staining in 8 body parts.
Homophila reports that CG7831 is a close match (6e-36) to human gene CMT2A;CMT2A1;KIF1B (NP_904325), a gene associated with Charcot-Marie-Tooth disease, type 2A1, 118210 (3);Neuroblastoma, 256700 (3);Pheochromocytoma, 171300 (3).
BioGrid reports that CG7831 interacts with CG8308 CG17566 CG3018 CG1763 CG12298 .
VDRC has 3 RNAi stocks for FBgn0002924 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 4 0.10Down
Head13 ± 12 of 4 0.10Down
Eye7 ± 11 of 4 0.05Down
Thoracicoabdominal ganglion30 ± 24 of 4 0.20Down
Salivary gland13 ± 20 of 4 0.10Down
Crop16 ± 23 of 4 0.10Down
Midgut31 ± 13 of 4 0.20Down
Tubule10 ± 10 of 4 0.10Down
Hindgut17 ± 14 of 4 0.10Down
Heart8 ± 12 of 4 0.06Down
Fat body14 ± 43 of 4 0.11Down
Ovary287 ± 64 of 4 2.10Up
Testis108 ± 94 of 4 0.80None
Male accessory glands15 ± 40 of 4 0.10Down
Virgin spermatheca9 ± 11 of 4 0.07Down
Mated spermatheca5 ± 11 of 4 0.04Down
Adult carcass22 ± 52 of 4 0.20Down
Larval CNS389 ± 114 of 4 2.83Up
Larval Salivary gland70 ± 14 of 4 0.51Down
Larval midgut30 ± 34 of 4 0.22Down
Larval tubule15 ± 21 of 4 0.10Down
Larval hindgut42 ± 24 of 4 0.31Down
Larval fat body44 ± 74 of 4 0.30Down
Larval trachea82 ± 14 of 4 0.60Down
Larval carcass74 ± 74 of 4 0.54Down
S2 cells (growing)987 ± 314 of 4 7.18Up
Whole fly137 ± 74 of 4

Looking for FBgn0002924. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime