FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002930 through 18771 annotations produced 1 hits

serpin43Ac (nec):

Annotation Number : CG1857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002930
Gbrowse : chr2R:3043980-3045733 (-) // 100.0 //
Probeset : 1636653_at
Accessions : protein= NP_524851;, nucleotide= NM_080112;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopep
FlyMine data for FBgn0002930.
BDGP gene expression has embryonic in situ data for nec: 4 pix of staining in 1 body parts.
Homophila reports that CG1857 is a close match (2e-13) to human gene CBP2;PPROM;SERPINH2 (NP_001226), a gene associated with {Preterm premature rupture of the membranes, susceptibility to}, 610504 (3).
BioGrid reports that CG1857 interacts with CG8155 CG9924 CG11579 CG11579 CG11579 CG11579 CG3578 CG3578 CG5680 CG9885 CG7383 CG2275 CG4761 CG6367 CG6134 CG12559 CG14026 CG14026 CG4889 CG4889 CG2248 CG7873 CG9653 CG12919 CG12919 CG4353 CG4353 CG4353 CG4353 CG4353 CG4353 CG4353 CG4353 CG4353 CG4353 CG17964 CG2272 Dmel CG33956 Dmel CG33956 Dmel CG33956 .
VDRC has 3 RNAi stocks for FBgn0002930 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	273 ± 13	4 of 4	1.20	None
Head	1031 ± 11	4 of 4	4.50	Up
Eye	619 ± 65	4 of 4	2.69	Up
Thoracicoabdominal ganglion	335 ± 23	4 of 4	1.50	Up
Salivary gland	72 ± 10	2 of 4	0.31	Down
Crop	587 ± 6	4 of 4	2.60	Up
Midgut	25 ± 3	0 of 4	0.10	Down
Tubule	25 ± 5	1 of 4	0.10	Down
Hindgut	419 ± 10	4 of 4	1.80	Up
Heart	1113 ± 56	4 of 4	4.84	Up
Fat body	1884 ± 66	4 of 4	8.18	Up
Ovary	4 ± 1	0 of 4	0.00	Down
Testis	63 ± 2	4 of 4	0.30	Down
Male accessory glands	90 ± 19	4 of 4	0.40	Down
Virgin spermatheca	1157 ± 33	4 of 4	5.03	Up
Mated spermatheca	883 ± 71	4 of 4	3.84	Up
Adult carcass	1204 ± 44	4 of 4	5.20	Up
Larval CNS	16 ± 4	0 of 4	0.07	Down
Larval Salivary gland	35 ± 5	3 of 4	0.15	Down
Larval midgut	2 ± 0	0 of 4	0.01	Down
Larval tubule	5 ± 2	0 of 4	0.00	Down
Larval hindgut	106 ± 3	4 of 4	0.46	Down
Larval fat body	1114 ± 100	4 of 4	4.80	Up
Larval trachea	42 ± 11	4 of 4	0.18	Down
Larval carcass	47 ± 2	4 of 4	0.21	Down
S2 cells (growing)	1 ± 0	0 of 4	0.01	Down
Whole fly	230 ± 14	4 of 4

Looking for FBgn0002930. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720