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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002931 through 18771 annotations produced 1 hits



net (net):

Annotation Number : CG11450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002931
Gbrowse : chr2L:82455-87382 (-) // 100.0 //
Probeset : 1627446_at
Accessions : protein= NP_524820;, nucleotide= NM_080081;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0002931.
BDGP gene expression has embryonic in situ data for net: 46 pix of staining in 16 body parts.
BioGrid reports that CG11450 interacts with CG1007 CG5460 CG10079 CG10079 CG14228 CG14228 CG1007 CG7892 CG1004 .
TRiP has 1 RNAi stocks for FBgn0002931 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002931 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 03 of 4 0.20Down
Head39 24 of 4 1.80Up
Eye8 04 of 4 0.39Down
Thoracicoabdominal ganglion13 14 of 4 0.60Down
Salivary gland484 634 of 421.82Up
Crop23 24 of 4 1.10None
Midgut23 04 of 4 1.10None
Tubule18 43 of 4 0.80None
Hindgut69 74 of 4 3.10Up
Heart19 14 of 4 0.88None
Fat body21 94 of 4 0.99None
Ovary0 00 of 4 0.00Down
Testis19 24 of 4 0.90None
Male accessory glands1 10 of 4 0.10Down
Virgin spermatheca5 11 of 4 0.26Down
Mated spermatheca19 24 of 4 0.88None
Adult carcass43 44 of 4 2.00Up
Larval CNS32 24 of 4 1.45Up
Larval Salivary gland626 794 of 428.17Up
Larval midgut37 24 of 4 1.68Up
Larval tubule14 24 of 4 0.60Down
Larval hindgut84 224 of 4 3.79None
Larval fat body86 134 of 4 3.90Up
Larval trachea7 13 of 4 0.34Down
Larval carcass52 64 of 4 2.36Up
S2 cells (growing)25 14 of 4 1.16None
Whole fly22 14 of 4

Looking for FBgn0002931. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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