FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002936 through 18771 annotations produced 1 hits

chr2L:877292-878270 (+) // 100.0 // (neither inactivation nor afterpotential A):

Annotation Number : CG3966
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623862_at
Accessions : protein= , nucleotide= NP_476656;
Pathway : "0006457 // protein folding // inferred from electronic annotation /// 0006458 // 'de novo' protein folding // non-trace
Interpro : visible light // inferred from mutant phenotype /// 0016063 // rhodopsin biosynthetic process // inferred from mutant p
FlyMine data for full length.
BioGrid reports that CG3966 interacts with CG9184 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	25 ± 1	4 of 4	0.80	None
Head	596 ± 40	4 of 4	18.70	Up
Eye	2789 ± 249	4 of 4	87.39	Up
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.00	Down
Salivary gland	7 ± 2	0 of 4	0.25	Down
Crop	0 ± 0	0 of 4	0.00	Down
Midgut	12 ± 0	0 of 4	0.40	Down
Tubule	7 ± 0	0 of 4	0.20	Down
Hindgut	2 ± 1	0 of 4	0.10	Down
Heart	3 ± 1	0 of 4	0.11	Down
Fat body	4 ± 3	0 of 4	0.13	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	2 ± 0	0 of 4	0.10	Down
Male accessory glands	3 ± 2	0 of 4	0.10	Down
Virgin spermatheca	4 ± 0	0 of 4	0.14	Down
Mated spermatheca	4 ± 1	0 of 4	0.15	Down
Adult carcass	5 ± 2	0 of 4	0.20	Down
Larval CNS	2 ± 2	0 of 4	0.07	Down
Larval Salivary gland	2 ± 0	0 of 4	0.06	Down
Larval midgut	17 ± 2	3 of 4	0.54	None
Larval tubule	10 ± 3	0 of 4	0.30	Down
Larval hindgut	1 ± 0	0 of 4	0.05	Down
Larval fat body	6 ± 2	0 of 4	0.20	Down
Larval trachea	28 ± 52	1 of 4	0.88	None
Larval carcass	4 ± 0	0 of 4	0.14	Down
S2 cells (growing)	2 ± 1	0 of 4	0.09	Down
Whole fly	31 ± 5	4 of 4

Looking for FBgn0002936. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720