FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002938 through 18771 annotations produced 2 hits

March 2006 (FlyBase/BDGP 5.3) (chr2L:7377735-7382776 (+) // 100.0 //):

Annotation Number : CG5125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1625219_at
Accessions : protein= EC:2.7.10.- /// EC:2.7.11.- /// EC:3.6.1.3, nucleotide=
Interpro : "0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // non
Homophila reports that CG5125 is a close match (7e-11) to human gene SRC;ASV;SRC1 (NP_938033), a gene associated with Colon cancer, advanced (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	1 of 4	1.00	None
Head	25 ± 2	4 of 4	4.50	Up
Eye	72 ± 16	4 of 4	12.76	Up
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.20	Down
Salivary gland	15 ± 3	0 of 4	2.70	None
Crop	3 ± 1	0 of 4	0.60	None
Midgut	4 ± 1	0 of 4	0.80	None
Tubule	2 ± 0	0 of 4	0.50	Down
Hindgut	3 ± 1	0 of 4	0.60	None
Heart	2 ± 0	0 of 4	0.35	Down
Fat body	7 ± 4	0 of 4	1.23	None
Ovary	2 ± 0	0 of 4	0.40	Down
Testis	3 ± 1	0 of 4	0.50	None
Male accessory glands	2 ± 0	0 of 4	0.40	Down
Virgin spermatheca	2 ± 1	0 of 4	0.48	Down
Mated spermatheca	3 ± 1	0 of 4	0.56	None
Adult carcass	6 ± 4	0 of 4	1.10	None
Larval CNS	1 ± 0	0 of 4	0.33	Down
Larval Salivary gland	4 ± 0	0 of 4	0.70	None
Larval midgut	5 ± 0	0 of 4	0.87	None
Larval tubule	3 ± 1	0 of 4	0.70	None
Larval hindgut	1 ± 0	0 of 4	0.34	Down
Larval fat body	2 ± 0	0 of 4	0.40	Down
Larval trachea	3 ± 1	0 of 4	0.53	Down
Larval carcass	4 ± 1	0 of 4	0.74	None
S2 cells (growing)	2 ± 0	0 of 4	0.37	Down
Whole fly	5 ± 0	1 of 4

March 2006 (FlyBase/BDGP 5.3) (chr2L:7377717-7384344 (+) // 100.0 //):

Annotation Number : CG5125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1634054_at
Accessions : protein= EC:2.7.10.- /// EC:2.7.11.- /// EC:3.6.1.3, nucleotide=
Interpro : "0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // non
Homophila reports that CG5125 is a close match (7e-11) to human gene SRC;ASV;SRC1 (NP_938033), a gene associated with Colon cancer, advanced (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	45 ± 4	4 of 4	0.50	Down
Head	1063 ± 47	4 of 4	12.50	Up
Eye	3711 ± 169	4 of 4	43.52	Up
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.00	Down
Salivary gland	2 ± 0	0 of 4	0.03	Down
Crop	0 ± 0	0 of 4	0.00	Down
Midgut	0 ± 0	0 of 4	0.00	Down
Tubule	1 ± 0	0 of 4	0.00	Down
Hindgut	2 ± 1	0 of 4	0.00	Down
Heart	3 ± 1	0 of 4	0.04	Down
Fat body	5 ± 4	0 of 4	0.07	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	2 ± 0	0 of 4	0.00	Down
Male accessory glands	0 ± 0	0 of 4	0.00	Down
Virgin spermatheca	3 ± 2	0 of 4	0.04	Down
Mated spermatheca	3 ± 1	0 of 4	0.04	Down
Adult carcass	4 ± 1	0 of 4	0.00	Down
Larval CNS	12 ± 1	0 of 4	0.15	Down
Larval Salivary gland	1 ± 0	0 of 4	0.02	Down
Larval midgut	1 ± 0	0 of 4	0.02	Down
Larval tubule	0 ± 0	0 of 4	0.00	Down
Larval hindgut	1 ± 0	0 of 4	0.02	Down
Larval fat body	4 ± 1	0 of 4	0.10	Down
Larval trachea	52 ± 99	1 of 4	0.62	None
Larval carcass	0 ± 0	0 of 4	0.01	Down
S2 cells (growing)	1 ± 1	0 of 4	0.02	Down
Whole fly	85 ± 2	4 of 4

Looking for FBgn0002938. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720