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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0002939 through 18771 annotations produced 1 hits

neither inactivation nor afterpotential D (ninaD):

Annotation Number : CG31783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002939
Gbrowse : chr2L:18081629-18083608 (+) // 100.0 //
Probeset : 1632705_at
Accessions : protein= NP_724087;, nucleotide= NM_165237;
Pathway : visible light // inferred from mutant phenotype /// 0007604 // phototransduction
Interpro : UV // inferred from mutant phenotype /// 0016063 // rhodopsin biosynthetic process // inferred from mutant phenotype //
FlyMine data for FBgn0002939.
Homophila reports that CG31783 is a close match (7e-35) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
TRiP has 1 RNAi stocks for FBgn0002939 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002939 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.30None
Head40 44 of 4 1.90Up
Eye11 10 of 4 0.56None
Thoracicoabdominal ganglion4 10 of 4 0.20None
Salivary gland2 00 of 4 0.13None
Crop5 10 of 4 0.20None
Midgut352 504 of 417.00Up
Tubule121 303 of 4 5.90Up
Hindgut2 10 of 4 0.10None
Heart56 24 of 4 2.72Up
Fat body5 30 of 4 0.26None
Ovary0 00 of 4 0.00Down
Testis3 10 of 4 0.20None
Male accessory glands3 10 of 4 0.10None
Virgin spermatheca1 00 of 4 0.05Down
Mated spermatheca3 10 of 4 0.15None
Adult carcass16 30 of 4 0.80None
Larval CNS1 10 of 4 0.07Down
Larval Salivary gland2 10 of 4 0.13None
Larval midgut2016 1884 of 497.42Up
Larval tubule68 234 of 4 3.30None
Larval hindgut2 00 of 4 0.10None
Larval fat body2 00 of 4 0.10None
Larval trachea1 00 of 4 0.05Down
Larval carcass1 00 of 4 0.05Down
S2 cells (growing)0 00 of 4 0.03Down
Whole fly20 54 of 4

Looking for FBgn0002939. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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