FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002939 through 18771 annotations produced 1 hits

neither inactivation nor afterpotential D (ninaD):

Annotation Number : CG31783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002939
Gbrowse : chr2L:18081629-18083608 (+) // 100.0 //
Probeset : 1632705_at
Accessions : protein= NP_724087;, nucleotide= NM_165237;
Pathway : visible light // inferred from mutant phenotype /// 0007604 // phototransduction
Interpro : UV // inferred from mutant phenotype /// 0016063 // rhodopsin biosynthetic process // inferred from mutant phenotype //
FlyMine data for FBgn0002939.
Homophila reports that CG31783 is a close match (7e-35) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
TRiP has 1 RNAi stocks for FBgn0002939 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002939 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	0.30	None
Head	40 ± 4	4 of 4	1.90	Up
Eye	11 ± 1	0 of 4	0.56	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.20	None
Salivary gland	2 ± 0	0 of 4	0.13	None
Crop	5 ± 1	0 of 4	0.20	None
Midgut	352 ± 50	4 of 4	17.00	Up
Tubule	121 ± 30	3 of 4	5.90	Up
Hindgut	2 ± 1	0 of 4	0.10	None
Heart	56 ± 2	4 of 4	2.72	Up
Fat body	5 ± 3	0 of 4	0.26	None
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	3 ± 1	0 of 4	0.20	None
Male accessory glands	3 ± 1	0 of 4	0.10	None
Virgin spermatheca	1 ± 0	0 of 4	0.05	Down
Mated spermatheca	3 ± 1	0 of 4	0.15	None
Adult carcass	16 ± 3	0 of 4	0.80	None
Larval CNS	1 ± 1	0 of 4	0.07	Down
Larval Salivary gland	2 ± 1	0 of 4	0.13	None
Larval midgut	2016 ± 188	4 of 4	97.42	Up
Larval tubule	68 ± 23	4 of 4	3.30	None
Larval hindgut	2 ± 0	0 of 4	0.10	None
Larval fat body	2 ± 0	0 of 4	0.10	None
Larval trachea	1 ± 0	0 of 4	0.05	Down
Larval carcass	1 ± 0	0 of 4	0.05	Down
S2 cells (growing)	0 ± 0	0 of 4	0.03	Down
Whole fly	20 ± 5	4 of 4

Looking for FBgn0002939. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720