FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002940 through 18771 annotations produced 2 hits

rhodopsin (ninaE):

Annotation Number : CG4550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002940
Gbrowse : chr3R:15711967-15713928 (-) // 100.0 //
Probeset : 1641734_at
Accessions : protein= NP_524407;, nucleotide= NM_079683;
Pathway : 0005767 // secondary lysosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from direct a
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0002940.
BDGP gene expression has embryonic in situ data for ninaE: 8 pix of staining in 1 body parts.
Homophila reports that CG4550 is a close match (2e-11) to human gene RGR (NP_001012738), a gene associated with Retinitis pigmentosa, autosomal dominant (3);Retinitis pigmentosa, autosomal recessive (3).
BioGrid reports that CG4550 interacts with CG4730 CG6864 CG12530 CG2248 CG10888 CG9668 CG5279 CG5279 CG5192 CG3620 CG3620 CG11111 CG6571 CG6571 CG3966 CG3504 CG7875 .
TRiP has 2 RNAi stocks for FBgn0002940 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002940 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	57 ± 10	4 of 4	0.00	Down
Head	5940 ± 192	4 of 4	2.20	Up
Eye	9586 ± 92	4 of 4	3.47	Up
Thoracicoabdominal ganglion	9 ± 2	2 of 4	0.00	Down
Salivary gland	24 ± 2	3 of 4	0.01	Down
Crop	13 ± 2	2 of 4	0.00	Down
Midgut	6 ± 2	0 of 4	0.00	Down
Tubule	9 ± 0	0 of 4	0.00	Down
Hindgut	10 ± 1	3 of 4	0.00	Down
Heart	141 ± 93	4 of 4	0.05	Down
Fat body	12 ± 7	0 of 4	0.00	Down
Ovary	3 ± 0	0 of 4	0.00	Down
Testis	8 ± 1	1 of 4	0.00	Down
Male accessory glands	15 ± 4	2 of 4	0.00	Down
Virgin spermatheca	8 ± 1	3 of 4	0.00	Down
Mated spermatheca	9 ± 1	1 of 4	0.00	Down
Adult carcass	6 ± 3	0 of 4	0.00	Down
Larval CNS	7 ± 2	3 of 4	0.00	Down
Larval Salivary gland	15 ± 2	2 of 4	0.01	Down
Larval midgut	19 ± 4	4 of 4	0.01	Down
Larval tubule	6 ± 1	1 of 4	0.00	Down
Larval hindgut	8 ± 2	1 of 4	0.00	Down
Larval fat body	14 ± 1	2 of 4	0.00	Down
Larval trachea	1516 ± 2880	3 of 4	0.55	None
Larval carcass	7 ± 1	0 of 4	0.00	Down
S2 cells (growing)	6 ± 0	0 of 4	0.00	Down
Whole fly	2761 ± 149	4 of 4

Lectin28C /// rhodopsin (lectin-28C /// ninaE):

Annotation Number : CG7106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040099
Gbrowse : chr2L:7857089-7857931 (+) // 100.0 //
Probeset : 1634786_at
Accessions : protein= NP_524407; /// NP_652636;, nucleotide= NM_079683; /// NM_144379;
Pathway : 0005767 // secondary lysosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from direct a
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0040099.
VDRC has 2 RNAi stocks for FBgn0040099 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	24 ± 2	4 of 4	0.40	None
Head	224 ± 40	4 of 4	3.50	Up
Eye	96 ± 19	4 of 4	1.49	None
Thoracicoabdominal ganglion	15 ± 2	4 of 4	0.20	None
Salivary gland	21 ± 2	1 of 4	0.34	None
Crop	8 ± 1	3 of 4	0.10	None
Midgut	32 ± 5	4 of 4	0.50	None
Tubule	4 ± 0	0 of 4	0.10	Down
Hindgut	25 ± 5	4 of 4	0.40	None
Heart	1331 ± 42	4 of 4	20.53	Up
Fat body	502 ± 154	4 of 4	7.74	Up
Ovary	2 ± 0	0 of 4	0.00	None
Testis	7 ± 0	2 of 4	0.10	None
Male accessory glands	14 ± 2	2 of 4	0.20	None
Virgin spermatheca	358 ± 45	4 of 4	5.53	Up
Mated spermatheca	214 ± 39	4 of 4	3.31	Up
Adult carcass	243 ± 37	4 of 4	3.70	Up
Larval CNS	2 ± 1	0 of 4	0.05	None
Larval Salivary gland	20 ± 3	4 of 4	0.32	None
Larval midgut	105 ± 18	4 of 4	1.63	None
Larval tubule	18 ± 3	4 of 4	0.30	None
Larval hindgut	20 ± 5	4 of 4	0.31	None
Larval fat body	642 ± 84	4 of 4	9.90	Up
Larval trachea	17 ± 3	4 of 4	0.26	None
Larval carcass	168 ± 17	4 of 4	2.60	Up
S2 cells (growing)	228 ± 15	4 of 4	3.53	Up
Whole fly	64 ± 29	4 of 4

Looking for FBgn0002940. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720