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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002945 through 18771 annotations produced 1 hits



Naked (nkd):

Annotation Number : CG11614
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002945
Gbrowse : chr3L:18996831-19038431 (-) // 100.0 //
Probeset : 1630361_at
Accessions : protein= NP_524788;, nucleotide= NM_080049;
Pathway : planar cell polarity pathway // inferred from mutant phenotype"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
FlyMine data for FBgn0002945.
BioGrid reports that CG11614 interacts with CG14641 CG2227 CG32356 CG11579 CG11579 CG11579 CG18361 CG18361 CG18361 CG18361 CG17697 CG6205 CG2621 CG18102 CG4889 CG4889 CG4889 CG4889 .
VDRC has 2 RNAi stocks for FBgn0002945 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 54 of 4 3.00Up
Head47 64 of 4 2.40Up
Eye38 34 of 4 1.93Up
Thoracicoabdominal ganglion51 34 of 4 2.60Up
Salivary gland34 34 of 4 1.69Up
Crop77 34 of 4 3.80Up
Midgut27 24 of 4 1.40Up
Tubule52 44 of 4 2.60Up
Hindgut73 24 of 4 3.60Up
Heart35 14 of 4 1.75Up
Fat body22 34 of 4 1.11None
Ovary2 02 of 4 0.10Down
Testis6 14 of 4 0.30Down
Male accessory glands43 14 of 4 2.10Up
Virgin spermatheca32 14 of 4 1.62Up
Mated spermatheca36 34 of 4 1.81Up
Adult carcass20 33 of 4 1.00None
Larval CNS167 244 of 4 8.33Up
Larval Salivary gland32 24 of 4 1.59Up
Larval midgut19 14 of 4 0.95None
Larval tubule34 44 of 4 1.70Up
Larval hindgut45 34 of 4 2.24Up
Larval fat body15 33 of 4 0.80None
Larval trachea49 64 of 4 2.46Up
Larval carcass45 74 of 4 2.28Up
S2 cells (growing)30 24 of 4 1.52Up
Whole fly20 04 of 4

Looking for FBgn0002945. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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