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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002948 through 18771 annotations produced 1 hits



no distributive disjunction (nod):

Annotation Number : CG1763
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002948
Gbrowse : chrX:11474850-11479787 (+) // 100.0 //
Probeset : 1639689_at
Accessions : protein= NP_511125;, nucleotide= NM_078570;
Pathway : 0005871 // kinesin complex // inferred from sequence or structural similarity /// 0005871 // kinesin complex // inferred
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0002948.
BDGP gene expression has embryonic in situ data for nod: 22 pix of staining in 19 body parts.
Homophila reports that CG1763 is a close match (9e-36) to human gene CMT2A;CMT2A1;KIF1B (NP_904325), a gene associated with Charcot-Marie-Tooth disease, type 2A1, 118210 (3);Neuroblastoma, 256700 (3);Pheochromocytoma, 171300 (3).
BioGrid reports that CG1763 interacts with CG5034 CG7831 CG8308 CG3018 CG10718 CG12298 .
VDRC has 2 RNAi stocks for FBgn0002948 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 14 of 4 0.10Down
Head16 ± 14 of 4 0.10Down
Eye33 ± 14 of 4 0.19Down
Thoracicoabdominal ganglion22 ± 24 of 4 0.10Down
Salivary gland20 ± 30 of 4 0.12Down
Crop37 ± 14 of 4 0.20Down
Midgut11 ± 11 of 4 0.10Down
Tubule11 ± 02 of 4 0.10Down
Hindgut20 ± 14 of 4 0.10Down
Heart16 ± 14 of 4 0.09Down
Fat body25 ± 34 of 4 0.15Down
Ovary453 ± 94 of 4 2.60Up
Testis10 ± 04 of 4 0.10Down
Male accessory glands20 ± 34 of 4 0.10Down
Virgin spermatheca18 ± 14 of 4 0.10Down
Mated spermatheca14 ± 13 of 4 0.08Down
Adult carcass35 ± 64 of 4 0.20Down
Larval CNS79 ± 64 of 4 0.45Down
Larval Salivary gland11 ± 14 of 4 0.07Down
Larval midgut10 ± 22 of 4 0.06Down
Larval tubule10 ± 12 of 4 0.10Down
Larval hindgut20 ± 14 of 4 0.12Down
Larval fat body16 ± 23 of 4 0.10Down
Larval trachea27 ± 24 of 4 0.15Down
Larval carcass19 ± 14 of 4 0.11Down
S2 cells (growing)52 ± 24 of 4 0.30Down
Whole fly176 ± 114 of 4

Looking for FBgn0002948. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime