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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002989 through 18771 annotations produced 1 hits



Okra (okr):

Annotation Number : CG3736
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002989
Gbrowse : chr2L:2989591-2992761 (-) // 100.0 //
Probeset : 1628198_at
Accessions : protein= NP_476661;, nucleotide= NM_057313;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0002989.
BDGP gene expression has embryonic in situ data for okr: 4 pix of staining in 1 body parts.
Homophila reports that CG3736 is a close match (9e-11) to human gene HARP;SIOD;SMARCAL1 (NP_054859), a gene associated with Schimke immunoosseous dysplasia, 242900 (3).
BioGrid reports that CG3736 interacts with CG6920 CG10895 .
TRiP has 3 RNAi stocks for FBgn0002989 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002989 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 14 of 4 0.50Down
Head33 44 of 4 0.50Down
Eye35 14 of 4 0.55Down
Thoracicoabdominal ganglion43 34 of 4 0.70Down
Salivary gland43 113 of 4 0.68None
Crop46 44 of 4 0.70Down
Midgut28 34 of 4 0.40Down
Tubule31 24 of 4 0.50Down
Hindgut28 14 of 4 0.40Down
Heart33 14 of 4 0.53Down
Fat body40 44 of 4 0.64Down
Ovary153 34 of 4 2.40Up
Testis26 24 of 4 0.40Down
Male accessory glands39 34 of 4 0.60Down
Virgin spermatheca37 34 of 4 0.58Down
Mated spermatheca33 34 of 4 0.52Down
Adult carcass27 43 of 4 0.40Down
Larval CNS87 74 of 4 1.36Up
Larval Salivary gland40 54 of 4 0.63Down
Larval midgut25 34 of 4 0.40Down
Larval tubule39 44 of 4 0.60Down
Larval hindgut37 24 of 4 0.58Down
Larval fat body39 54 of 4 0.60Down
Larval trachea53 44 of 4 0.83None
Larval carcass43 14 of 4 0.68Down
S2 cells (growing)59 14 of 4 0.92None
Whole fly64 54 of 4

Looking for FBgn0002989. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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