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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003008 through 18771 annotations produced 1 hits



orange (or):

Annotation Number : CG3029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003008
Gbrowse : chr2R:19855466-19856467 (+) // 100.0 //
Probeset : 1634817_at
Accessions : protein= NP_536793;, nucleotide= NM_080532;
Pathway : 0008021 // synaptic vesicle // traceable author statement /// 0030117 // membrane coat // inferred from electronic annot
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferre
FlyMine data for FBgn0003008.
BDGP gene expression has embryonic in situ data for or: 8 pix of staining in 1 body parts.
Homophila reports that CG3029 is a close match (6e-22) to human gene AP1S2;MRX59 (NP_003907), a gene associated with Mental retardation, X-linked 59, 300630 (3).
TRiP has 1 RNAi stocks for FBgn0003008 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003008 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 54 of 4 1.20Up
Head181 24 of 4 1.10None
Eye316 124 of 4 1.87Up
Thoracicoabdominal ganglion223 84 of 4 1.30Up
Salivary gland428 194 of 4 2.53Up
Crop169 84 of 4 1.00None
Midgut135 14 of 4 0.80Down
Tubule177 24 of 4 1.00Up
Hindgut103 34 of 4 0.60Down
Heart190 64 of 4 1.12None
Fat body199 174 of 4 1.17Up
Ovary274 24 of 4 1.60Up
Testis139 24 of 4 0.80Down
Male accessory glands215 44 of 4 1.30Up
Virgin spermatheca258 34 of 4 1.53Up
Mated spermatheca273 124 of 4 1.62Up
Adult carcass144 44 of 4 0.90Down
Larval CNS234 64 of 4 1.38Up
Larval Salivary gland435 264 of 4 2.57Up
Larval midgut115 44 of 4 0.68Down
Larval tubule221 44 of 4 1.30Up
Larval hindgut128 64 of 4 0.76Down
Larval fat body351 184 of 4 2.10Up
Larval trachea271 64 of 4 1.60Up
Larval carcass147 94 of 4 0.87None
S2 cells (growing)192 34 of 4 1.14Up
Whole fly169 44 of 4

Looking for FBgn0003008. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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