FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003015 through 18771 annotations produced 3 hits

oskar (osk):

Annotation Number : CG10901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003015
Gbrowse : chr3R:4760867-4764123 (+) // 100.0 //
Probeset : 1631153_at
Accessions : protein= NP_731295; /// NP_996186;, nucleotide= NM_169248; /// NM_206464;
Pathway : embryo // traceable author statement /// 0019094 // pole plasm mRNA localization // traceable author statement /// 0030
Interpro : 0043186 // P granule // inferred from direct assay /// 0043186 // P granule // traceable author statement /// 0045495 //
FlyMine data for FBgn0003015.
BDGP gene expression has embryonic in situ data for osk: 14 pix of staining in 7 body parts.
BioGrid reports that CG10901 interacts with CG15185 CG18398 CG2174 CG5383 CG8388 CG6137 CG6137 CG6137 CG1034 CG9401 CG5637 CG5637 CG5637 CG5771 CG4898 CG5753 CG6705 CG3506 CG3506 CG3506 CG3506 CG31762 CG31762 .
TRiP has 2 RNAi stocks for FBgn0003015 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003015 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	2 of 4	0.00	Down
Head	1 ± 1	0 of 4	0.00	Down
Eye	3 ± 0	0 of 4	0.01	Down
Thoracicoabdominal ganglion	3 ± 1	1 of 4	0.00	Down
Salivary gland	14 ± 5	1 of 4	0.02	Down
Crop	7 ± 0	2 of 4	0.00	Down
Midgut	2 ± 0	0 of 4	0.00	Down
Tubule	26 ± 20	1 of 4	0.00	Down
Hindgut	1 ± 0	0 of 4	0.00	Down
Heart	3 ± 0	0 of 4	0.01	Down
Fat body	69 ± 68	4 of 4	0.11	Down
Ovary	1827 ± 24	4 of 4	2.90	Up
Testis	1 ± 0	0 of 4	0.00	Down
Male accessory glands	2 ± 1	0 of 4	0.00	Down
Virgin spermatheca	27 ± 5	4 of 4	0.04	Down
Mated spermatheca	22 ± 6	3 of 4	0.04	Down
Adult carcass	53 ± 21	4 of 4	0.10	Down
Larval CNS	6 ± 2	4 of 4	0.01	Down
Larval Salivary gland	4 ± 1	1 of 4	0.01	Down
Larval midgut	10 ± 5	2 of 4	0.02	Down
Larval tubule	2 ± 0	0 of 4	0.00	Down
Larval hindgut	4 ± 1	3 of 4	0.01	Down
Larval fat body	1 ± 1	0 of 4	0.00	Down
Larval trachea	0 ± 0	0 of 4	0.00	Down
Larval carcass	1 ± 0	0 of 4	0.00	Down
S2 cells (growing)	15 ± 2	4 of 4	0.02	Down
Whole fly	622 ± 20	4 of 4

oskar (osk):

Annotation Number : CG10901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003015
Gbrowse : chr3R:4760867-4764123 (+) // 100.0 //
Probeset : 1640576_a_at
Accessions : protein= NP_731295; /// NP_996186;, nucleotide= NM_169248; /// NM_206464;
Pathway : embryo // traceable author statement /// 0019094 // pole plasm mRNA localization // traceable author statement /// 0030
Interpro : 0043186 // P granule // inferred from direct assay /// 0043186 // P granule // traceable author statement /// 0045495 //
FlyMine data for FBgn0003015.
BDGP gene expression has embryonic in situ data for osk: 14 pix of staining in 7 body parts.
BioGrid reports that CG10901 interacts with CG15185 CG18398 CG2174 CG5383 CG8388 CG6137 CG6137 CG6137 CG1034 CG9401 CG5637 CG5637 CG5637 CG5771 CG4898 CG5753 CG6705 CG3506 CG3506 CG3506 CG3506 CG31762 CG31762 .
TRiP has 2 RNAi stocks for FBgn0003015 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003015 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	1 of 4	0.00	Down
Head	4 ± 1	1 of 4	0.00	Down
Eye	5 ± 0	0 of 4	0.01	Down
Thoracicoabdominal ganglion	4 ± 1	1 of 4	0.00	Down
Salivary gland	7 ± 2	0 of 4	0.02	Down
Crop	3 ± 0	0 of 4	0.00	Down
Midgut	4 ± 1	0 of 4	0.00	Down
Tubule	3 ± 0	0 of 4	0.00	Down
Hindgut	2 ± 1	1 of 4	0.00	Down
Heart	3 ± 0	0 of 4	0.01	Down
Fat body	15 ± 7	3 of 4	0.04	Down
Ovary	1161 ± 43	4 of 4	2.70	Up
Testis	3 ± 0	0 of 4	0.00	Down
Male accessory glands	4 ± 2	0 of 4	0.00	Down
Virgin spermatheca	4 ± 1	0 of 4	0.01	Down
Mated spermatheca	6 ± 0	0 of 4	0.02	Down
Adult carcass	29 ± 10	2 of 4	0.10	Down
Larval CNS	4 ± 0	2 of 4	0.01	Down
Larval Salivary gland	3 ± 2	0 of 4	0.01	Down
Larval midgut	8 ± 1	2 of 4	0.02	Down
Larval tubule	5 ± 1	0 of 4	0.00	Down
Larval hindgut	5 ± 1	1 of 4	0.01	Down
Larval fat body	8 ± 1	0 of 4	0.00	Down
Larval trachea	5 ± 1	0 of 4	0.01	Down
Larval carcass	3 ± 0	0 of 4	0.01	Down
S2 cells (growing)	24 ± 1	4 of 4	0.06	Down
Whole fly	435 ± 14	4 of 4

oskar (osk):

Annotation Number : CG10901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003015
Gbrowse : chr3R:4760852-4763832 (+) // 100.0 //
Probeset : 1639953_at
Accessions : protein= NP_731295; /// NP_996186;, nucleotide= NM_169248; /// NM_206464;
Pathway : embryo // traceable author statement /// 0019094 // pole plasm mRNA localization // traceable author statement /// 0030
Interpro : 0043186 // P granule // inferred from direct assay /// 0043186 // P granule // traceable author statement /// 0045495 //
FlyMine data for FBgn0003015.
BDGP gene expression has embryonic in situ data for osk: 14 pix of staining in 7 body parts.
BioGrid reports that CG10901 interacts with CG15185 CG18398 CG2174 CG5383 CG8388 CG6137 CG6137 CG6137 CG1034 CG9401 CG5637 CG5637 CG5637 CG5771 CG4898 CG5753 CG6705 CG3506 CG3506 CG3506 CG3506 CG31762 CG31762 .
TRiP has 2 RNAi stocks for FBgn0003015 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003015 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.00	Down
Head	4 ± 0	0 of 4	0.00	Down
Eye	3 ± 1	0 of 4	0.00	Down
Thoracicoabdominal ganglion	3 ± 0	0 of 4	0.00	Down
Salivary gland	7 ± 1	0 of 4	0.01	Down
Crop	7 ± 1	1 of 4	0.00	Down
Midgut	2 ± 0	0 of 4	0.00	Down
Tubule	15 ± 11	0 of 4	0.00	Down
Hindgut	4 ± 2	0 of 4	0.00	Down
Heart	2 ± 1	0 of 4	0.00	Down
Fat body	35 ± 28	3 of 4	0.04	Down
Ovary	2035 ± 52	4 of 4	2.50	Up
Testis	2 ± 1	0 of 4	0.00	Down
Male accessory glands	6 ± 3	0 of 4	0.00	Down
Virgin spermatheca	13 ± 1	3 of 4	0.02	Down
Mated spermatheca	12 ± 3	1 of 4	0.01	Down
Adult carcass	58 ± 25	4 of 4	0.10	Down
Larval CNS	4 ± 1	2 of 4	0.01	Down
Larval Salivary gland	4 ± 1	0 of 4	0.01	Down
Larval midgut	6 ± 2	1 of 4	0.01	Down
Larval tubule	3 ± 1	0 of 4	0.00	Down
Larval hindgut	4 ± 0	0 of 4	0.01	Down
Larval fat body	3 ± 1	0 of 4	0.00	Down
Larval trachea	3 ± 2	1 of 4	0.00	Down
Larval carcass	2 ± 0	0 of 4	0.00	Down
S2 cells (growing)	22 ± 1	4 of 4	0.03	Down
Whole fly	812 ± 47	4 of 4

Looking for FBgn0003015. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720