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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003023 through 18771 annotations produced 1 hits



ovarian tumor (otu):

Annotation Number : CG12743
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003023
Gbrowse : chrX:8379025-8383533 (-) // 100.0 //
Probeset : 1641484_a_at
Accessions : protein= NP_511089; /// NP_727271; /// NP_996379;, nucleotide= NM_078534; /// NM_167158; /// NM_206656;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation
FlyMine data for FBgn0003023.
BioGrid reports that CG12743 interacts with CG11181 CG11181 CG11387 CG10847 CG12085 CG16724 Dmel CG18350 .
TRiP has 1 RNAi stocks for FBgn0003023 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003023 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 03 of 4 0.00Down
Head5 00 of 4 0.00Down
Eye4 10 of 4 0.01Down
Thoracicoabdominal ganglion5 12 of 4 0.00Down
Salivary gland18 43 of 4 0.04Down
Crop7 13 of 4 0.00Down
Midgut7 13 of 4 0.00Down
Tubule12 70 of 4 0.00Down
Hindgut4 00 of 4 0.00Down
Heart4 11 of 4 0.01Down
Fat body19 114 of 4 0.04Down
Ovary1353 384 of 4 2.70Up
Testis6 03 of 4 0.00Down
Male accessory glands10 23 of 4 0.00Down
Virgin spermatheca15 14 of 4 0.03Down
Mated spermatheca13 43 of 4 0.03Down
Adult carcass27 94 of 4 0.10Down
Larval CNS3 02 of 4 0.01Down
Larval Salivary gland6 01 of 4 0.01Down
Larval midgut6 13 of 4 0.01Down
Larval tubule6 01 of 4 0.00Down
Larval hindgut4 02 of 4 0.01Down
Larval fat body5 20 of 4 0.00Down
Larval trachea1 21 of 4 0.00Down
Larval carcass3 10 of 4 0.01Down
S2 cells (growing)2 00 of 4 0.01Down
Whole fly502 484 of 4

Looking for FBgn0003023. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime