FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003028 through 18771 annotations produced 1 hits

shaven baby (ovo):

Annotation Number : CG6824
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003028
Gbrowse : chrX:4942329-4963726 (+) // 99.8 //
Probeset : 1627259_a_at
Accessions : protein= NP_001033831; /// NP_001162673; /// NP_525077; /// NP_726971; /// NP_726972;, nucleotide= NM_001038742; /// NM_001169202; /// NM_080338; /// NM_167026; /// NM_167027;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred by curator /// 000563
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direc
FlyMine data for FBgn0003028.
BDGP gene expression has embryonic in situ data for ovo: 20 pix of staining in 13 body parts.
Homophila reports that CG6824 is a close match (8e-11) to human gene STQTL10;ZBTB38 (NP_001073881), a gene associated with {Stature QTL 10}, 612221 (3).
BioGrid reports that CG6824 interacts with CG9999 CG11579 CG11680 CG11680 CG10079 CG9375 CG17964 CG4528 CG10334 CG4889 Dmel CG18350 .
TRiP has 1 RNAi stocks for FBgn0003028 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003028 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 0	3 of 4	0.00	Down
Head	48 ± 8	4 of 4	0.10	Down
Eye	61 ± 3	4 of 4	0.18	Down
Thoracicoabdominal ganglion	5 ± 0	0 of 4	0.00	Down
Salivary gland	136 ± 9	4 of 4	0.41	Down
Crop	302 ± 13	4 of 4	0.90	None
Midgut	3 ± 1	0 of 4	0.00	Down
Tubule	16 ± 10	1 of 4	0.10	Down
Hindgut	131 ± 8	4 of 4	0.40	Down
Heart	7 ± 1	2 of 4	0.02	Down
Fat body	30 ± 14	4 of 4	0.09	Down
Ovary	953 ± 12	4 of 4	2.90	Up
Testis	4 ± 0	3 of 4	0.00	Down
Male accessory glands	6 ± 3	2 of 4	0.00	Down
Virgin spermatheca	59 ± 6	4 of 4	0.18	Down
Mated spermatheca	76 ± 15	4 of 4	0.23	Down
Adult carcass	73 ± 5	4 of 4	0.20	Down
Larval CNS	105 ± 8	4 of 4	0.32	Down
Larval Salivary gland	15 ± 1	4 of 4	0.05	Down
Larval midgut	7 ± 1	2 of 4	0.02	Down
Larval tubule	2 ± 1	0 of 4	0.00	Down
Larval hindgut	88 ± 4	4 of 4	0.27	Down
Larval fat body	13 ± 1	4 of 4	0.00	Down
Larval trachea	338 ± 20	4 of 4	1.02	None
Larval carcass	289 ± 26	4 of 4	0.87	None
S2 cells (growing)	113 ± 7	4 of 4	0.34	Down
Whole fly	333 ± 19	4 of 4

Looking for FBgn0003028. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720