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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003028 through 18771 annotations produced 1 hits



shaven baby (ovo):

Annotation Number : CG6824
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003028
Gbrowse : chrX:4942329-4963726 (+) // 99.8 //
Probeset : 1627259_a_at
Accessions : protein= NP_001033831; /// NP_001162673; /// NP_525077; /// NP_726971; /// NP_726972;, nucleotide= NM_001038742; /// NM_001169202; /// NM_080338; /// NM_167026; /// NM_167027;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred by curator /// 000563
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direc
FlyMine data for FBgn0003028.
BDGP gene expression has embryonic in situ data for ovo: 20 pix of staining in 13 body parts.
Homophila reports that CG6824 is a close match (8e-11) to human gene STQTL10;ZBTB38 (NP_001073881), a gene associated with {Stature QTL 10}, 612221 (3).
BioGrid reports that CG6824 interacts with CG9999 CG11579 CG11680 CG11680 CG10079 CG9375 CG17964 CG4528 CG10334 CG4889 Dmel CG18350 .
TRiP has 1 RNAi stocks for FBgn0003028 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003028 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 03 of 4 0.00Down
Head48 84 of 4 0.10Down
Eye61 34 of 4 0.18Down
Thoracicoabdominal ganglion5 00 of 4 0.00Down
Salivary gland136 94 of 4 0.41Down
Crop302 134 of 4 0.90None
Midgut3 10 of 4 0.00Down
Tubule16 101 of 4 0.10Down
Hindgut131 84 of 4 0.40Down
Heart7 12 of 4 0.02Down
Fat body30 144 of 4 0.09Down
Ovary953 124 of 4 2.90Up
Testis4 03 of 4 0.00Down
Male accessory glands6 32 of 4 0.00Down
Virgin spermatheca59 64 of 4 0.18Down
Mated spermatheca76 154 of 4 0.23Down
Adult carcass73 54 of 4 0.20Down
Larval CNS105 84 of 4 0.32Down
Larval Salivary gland15 14 of 4 0.05Down
Larval midgut7 12 of 4 0.02Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut88 44 of 4 0.27Down
Larval fat body13 14 of 4 0.00Down
Larval trachea338 204 of 4 1.02None
Larval carcass289 264 of 4 0.87None
S2 cells (growing)113 74 of 4 0.34Down
Whole fly333 194 of 4

Looking for FBgn0003028. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime