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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003034 through 18771 annotations produced 1 hits


chr3L:13294734-13295022 (+) // 100.0 // (sex peptide):

Annotation Number : CG17673
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633023_at
Accessions : protein= , nucleotide= NP_524057;
Pathway : "0006718 // juvenile hormone biosynthetic process // non-traceable author statement /// 0007557 // regulation of juvenil
Interpro : post-mating // inferred from mutant phenotype /// 0045434 // negative regulation of female receptivity
FlyMine data for full length.
BioGrid reports that CG17673 interacts with CG3619 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head5 ± 02 of 4 0.00Down
Eye3 ± 21 of 4 0.00Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland11 ± 30 of 4 0.01Down
Crop2 ± 10 of 4 0.00Down
Midgut8 ± 10 of 4 0.00Down
Tubule6 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart3 ± 00 of 4 0.00Down
Fat body6 ± 60 of 4 0.01Down
Ovary6 ± 31 of 4 0.00Down
Testis100 ± 514 of 4 0.10Down
Male accessory glands8630 ± 2554 of 4 7.70Up
Virgin spermatheca4 ± 10 of 4 0.00Down
Mated spermatheca2 ± 00 of 4 0.00Down
Adult carcass94 ± 414 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.00Down
Larval Salivary gland2 ± 10 of 4 0.00Down
Larval midgut11 ± 23 of 4 0.01Down
Larval tubule5 ± 20 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.00Down
Larval fat body2 ± 10 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.00Down
Larval carcass3 ± 00 of 4 0.00Down
S2 cells (growing)4 ± 10 of 4 0.00Down
Whole fly1122 ± 594 of 4

Looking for FBgn0003034. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime