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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003042 through 18771 annotations produced 1 hits

Polycomb (Pc):

Annotation Number : CG32443
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003042
Gbrowse : chr3L:21299235-21311076 (-) // 100.0 //
Probeset : 1636721_at
Accessions : protein= NP_524199;, nucleotide= NM_079475;
Pathway : abdomen // inferred from mutant phenotype /// 0016322 // neuron remodeling // inferred from mutant phenotype /// 001645
Interpro : 0000785 // chromatin // inferred from direct assay /// 0000785 // chromatin // inferred from electronic annotation /// 0
FlyMine data for FBgn0003042.
BioGrid reports that CG32443 interacts with CG11648 CG1028 CG8787 CG8787 CG3629 CG5942 CG5942 CG7776 CG7776 CG6502 CG6502 CG6502 CG6502 CG4264 CG4264 CG3696 CG8491 CG18740 CG18740 CG7467 CG3938 CG12223 CG12223 CG2674 CG5109 CG5109 CG5109 CG5109 CG5109 CG5109 CG7471 CG7471 CG9495 CG9495 CG1030 CG1030 CG17369 CG17369 CG32134 CG5229 CG2530 CG9696 CG7425 CG7425 CG12058 CG12058 CG3895 CG3895 CG18412 CG18412 CG18412 CG18412 CG18412 CG18412 CG18412 CG18412 CG3978 CG2368 CG6464 CG9936 CG1915 CG6993 CG8573 CG8573 CG6889 CG6889 CG7958 CG10897 CG8651 CG8651 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG3757 CG33261 CG33261 CG7471 .
TRiP has 4 RNAi stocks for FBgn0003042 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain233 34 of 4 3.10Up
Head72 54 of 4 1.00None
Eye61 84 of 4 0.81None
Thoracicoabdominal ganglion222 34 of 4 2.90Up
Salivary gland49 44 of 4 0.66Down
Crop42 54 of 4 0.60Down
Midgut29 24 of 4 0.40Down
Tubule44 24 of 4 0.60Down
Hindgut30 14 of 4 0.40Down
Heart19 04 of 4 0.26Down
Fat body33 54 of 4 0.45Down
Ovary259 54 of 4 3.40Up
Testis13 14 of 4 0.20Down
Male accessory glands61 24 of 4 0.80None
Virgin spermatheca28 24 of 4 0.38Down
Mated spermatheca36 14 of 4 0.48Down
Adult carcass24 32 of 4 0.30Down
Larval CNS212 104 of 4 2.81Up
Larval Salivary gland66 44 of 4 0.88None
Larval midgut28 34 of 4 0.37Down
Larval tubule34 34 of 4 0.50Down
Larval hindgut35 24 of 4 0.47Down
Larval fat body36 34 of 4 0.50Down
Larval trachea45 114 of 4 0.60Down
Larval carcass33 14 of 4 0.45Down
S2 cells (growing)71 34 of 4 0.95None
Whole fly75 54 of 4

Looking for FBgn0003042. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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