FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003044 through 18771 annotations produced 1 hits

Polycomblike (Pcl):

Annotation Number : CG5109
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003044
Gbrowse : chr2R:14022933-14026961 (+) // 99.9 //
Probeset : 1623525_at
Accessions : protein= NP_476672;, nucleotide= NM_057324;
Pathway : DNA-dependent // inferred from direct assay"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0003044.
BDGP gene expression has embryonic in situ data for Pcl: 26 pix of staining in 19 body parts.
BioGrid reports that CG5109 interacts with CG11648 CG11648 CG1028 CG5942 CG7776 CG6502 CG4264 CG18740 CG32443 CG32443 CG32443 CG32443 CG1028 CG1030 CG1030 CG10388 CG12058 CG12058 CG2759 CG2759 CG2759 CG2759 CG3757 CG8013 CG6502 CG7471 CG5109 CG14941 CG6502 CG14941 CG8013 CG7471 CG7471 CG6502 CG6502 CG6502 CG6502 .
TRiP has 3 RNAi stocks for FBgn0003044 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003044 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	118 ± 7	4 of 4	0.90	None
Head	39 ± 4	4 of 4	0.30	Down
Eye	50 ± 2	4 of 4	0.40	Down
Thoracicoabdominal ganglion	117 ± 4	4 of 4	0.90	None
Salivary gland	54 ± 4	4 of 4	0.43	Down
Crop	57 ± 1	4 of 4	0.50	Down
Midgut	41 ± 1	4 of 4	0.30	Down
Tubule	44 ± 2	4 of 4	0.40	Down
Hindgut	36 ± 2	4 of 4	0.30	Down
Heart	31 ± 5	4 of 4	0.25	Down
Fat body	60 ± 13	4 of 4	0.48	Down
Ovary	354 ± 1	4 of 4	2.80	Up
Testis	97 ± 6	4 of 4	0.80	Down
Male accessory glands	37 ± 1	4 of 4	0.30	Down
Virgin spermatheca	43 ± 2	4 of 4	0.35	Down
Mated spermatheca	40 ± 2	4 of 4	0.32	Down
Adult carcass	39 ± 2	4 of 4	0.30	Down
Larval CNS	280 ± 6	4 of 4	2.22	Up
Larval Salivary gland	137 ± 6	4 of 4	1.09	None
Larval midgut	53 ± 5	4 of 4	0.42	Down
Larval tubule	56 ± 4	4 of 4	0.40	Down
Larval hindgut	62 ± 4	4 of 4	0.50	Down
Larval fat body	64 ± 3	4 of 4	0.50	Down
Larval trachea	89 ± 5	4 of 4	0.71	Down
Larval carcass	66 ± 4	4 of 4	0.53	Down
S2 cells (growing)	155 ± 2	4 of 4	1.23	Up
Whole fly	126 ± 7	4 of 4

Looking for FBgn0003044. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720