Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003046 through 18771 annotations produced 1 hits



Gart intron gene (Pcp):

Annotation Number : CG3440
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003046
Gbrowse : chr2L:7021681-7022473 (+) // 100.0 //
Probeset : 1623092_at
Accessions : protein= NP_476673;, nucleotide= NM_057325;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008011
FlyMine data for FBgn0003046.
BDGP gene expression has embryonic in situ data for Pcp: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0003046 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head4 ± 20 of 4 0.20Down
Eye19 ± 14 of 4 0.72None
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland14 ± 10 of 4 0.52None
Crop3 ± 10 of 4 0.10Down
Midgut6 ± 00 of 4 0.20Down
Tubule5 ± 00 of 4 0.20Down
Hindgut6 ± 10 of 4 0.20Down
Heart3 ± 10 of 4 0.13Down
Fat body5 ± 50 of 4 0.20Down
Ovary4 ± 10 of 4 0.20Down
Testis9 ± 12 of 4 0.30Down
Male accessory glands6 ± 20 of 4 0.20Down
Virgin spermatheca8 ± 11 of 4 0.30Down
Mated spermatheca8 ± 01 of 4 0.32Down
Adult carcass30 ± 43 of 4 1.10None
Larval CNS12 ± 53 of 4 0.44Down
Larval Salivary gland13 ± 21 of 4 0.49Down
Larval midgut10 ± 01 of 4 0.37Down
Larval tubule9 ± 23 of 4 0.30Down
Larval hindgut134 ± 504 of 4 4.82None
Larval fat body90 ± 154 of 4 3.20Up
Larval trachea152 ± 564 of 4 5.46Up
Larval carcass2948 ± 3334 of 4105.60Up
S2 cells (growing)5 ± 00 of 4 0.19Down
Whole fly27 ± 44 of 4

Looking for FBgn0003046. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime