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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003048 through 18771 annotations produced 1 hits



pecanex (pcx):

Annotation Number : CG3443
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003048
Gbrowse : chrX:2119743-2132089 (+) // 100.0 //
Probeset : 1638200_at
Accessions : protein= NP_525045;, nucleotide= NM_080306;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0005887 // integral to plasma membrane // non-traceable
FlyMine data for FBgn0003048.
TRiP has 1 RNAi stocks for FBgn0003048 available for purchase.
VDRC has 8 RNAi stocks for FBgn0003048 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 64 of 4 2.20Up
Head51 ± 24 of 4 0.90None
Eye50 ± 44 of 4 0.91None
Thoracicoabdominal ganglion87 ± 54 of 4 1.60Up
Salivary gland68 ± 34 of 4 1.24None
Crop77 ± 14 of 4 1.40None
Midgut65 ± 54 of 4 1.20None
Tubule46 ± 34 of 4 0.80Down
Hindgut66 ± 34 of 4 1.20None
Heart63 ± 44 of 4 1.16None
Fat body96 ± 34 of 4 1.76Up
Ovary214 ± 24 of 4 3.90Up
Testis20 ± 24 of 4 0.40Down
Male accessory glands89 ± 64 of 4 1.60Up
Virgin spermatheca76 ± 44 of 4 1.39None
Mated spermatheca69 ± 34 of 4 1.26None
Adult carcass48 ± 54 of 4 0.90None
Larval CNS128 ± 114 of 4 2.34Up
Larval Salivary gland133 ± 84 of 4 2.43Up
Larval midgut94 ± 64 of 4 1.71Up
Larval tubule127 ± 64 of 4 2.30Up
Larval hindgut87 ± 34 of 4 1.60Up
Larval fat body83 ± 74 of 4 1.50Up
Larval trachea104 ± 104 of 4 1.91Up
Larval carcass90 ± 64 of 4 1.64Up
S2 cells (growing)127 ± 34 of 4 2.32Up
Whole fly55 ± 74 of 4

Looking for FBgn0003048. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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