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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003053 through 18771 annotations produced 1 hits



hindsight (peb):

Annotation Number : CG12212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003053
Gbrowse : chrX:4511601-4520249 (+) // 99.89 //
Probeset : 1622949_at
Accessions : protein= NP_001014722; /// NP_476674;, nucleotide= NM_001014722; /// NM_057326;
Pathway : leading edge cell fate determination // non-traceable author statement /// 0007398 // ectoderm development // traceable
Interpro : open tracheal system // traceable author statement /// 0035160 // maintenance of epithelial integrity
FlyMine data for FBgn0003053.
BDGP gene expression has embryonic in situ data for peb: 83 pix of staining in 24 body parts.
Homophila reports that CG12212 is a close match (8e-11) to human gene MRX92;ZNF674 (NP_001034980), a gene associated with Mental retardation, X-linked-92 (3).
BioGrid reports that CG12212 interacts with CG17666 CG17934 CG17945 CG7123 CG8942 CG9572 CG5680 CG5680 CG9885 CG9885 CG2275 CG3992 CG2762 .
TRiP has 3 RNAi stocks for FBgn0003053 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003053 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 10 of 4 0.10Down
Head38 14 of 4 0.50Down
Eye303 414 of 4 4.04Up
Thoracicoabdominal ganglion6 10 of 4 0.10Down
Salivary gland44 80 of 4 0.59Down
Crop9 30 of 4 0.10Down
Midgut285 74 of 4 3.80Up
Tubule20 12 of 4 0.30Down
Hindgut101 44 of 4 1.30Up
Heart286 124 of 4 3.81Up
Fat body158 224 of 4 2.10Up
Ovary48 04 of 4 0.60Down
Testis58 24 of 4 0.80Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca166 124 of 4 2.21Up
Mated spermatheca208 234 of 4 2.77Up
Adult carcass122 104 of 4 1.60Up
Larval CNS11 23 of 4 0.16Down
Larval Salivary gland203 294 of 4 2.71Up
Larval midgut272 34 of 4 3.62Up
Larval tubule27 52 of 4 0.40Down
Larval hindgut101 94 of 4 1.34None
Larval fat body4 10 of 4 0.10Down
Larval trachea274 354 of 4 3.65Up
Larval carcass25 20 of 4 0.33Down
S2 cells (growing)11 10 of 4 0.15Down
Whole fly75 24 of 4

Looking for FBgn0003053. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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