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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003057 through 18771 annotations produced 1 hits



(CG10598):

Annotation Number : CG10598
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003057
Gbrowse : chrX:17119743-17120592 (-) // 100.0 //
Probeset : 1633409_a_at
Accessions : protein= NP_573206;, nucleotide= NM_132978;
FlyMine data for FBgn0003057.
VDRC has 1 RNAi stocks for FBgn0003057 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head10 11 of 4 0.40Down
Eye4 00 of 4 0.17Down
Thoracicoabdominal ganglion8 10 of 4 0.30Down
Salivary gland15 60 of 4 0.57None
Crop8 10 of 4 0.30Down
Midgut17 20 of 4 0.70None
Tubule9 10 of 4 0.30Down
Hindgut14 00 of 4 0.50None
Heart5 10 of 4 0.21Down
Fat body14 71 of 4 0.51None
Ovary9 10 of 4 0.40Down
Testis6 11 of 4 0.20Down
Male accessory glands7 00 of 4 0.30Down
Virgin spermatheca8 11 of 4 0.31Down
Mated spermatheca10 40 of 4 0.37Down
Adult carcass9 20 of 4 0.40Down
Larval CNS4 40 of 4 0.17Down
Larval Salivary gland8 20 of 4 0.31Down
Larval midgut33 34 of 4 1.22None
Larval tubule10 20 of 4 0.40Down
Larval hindgut18 20 of 4 0.68None
Larval fat body7 20 of 4 0.30Down
Larval trachea13 41 of 4 0.51None
Larval carcass29 92 of 4 1.07None
S2 cells (growing)5 10 of 4 0.18Down
Whole fly27 54 of 4

Looking for FBgn0003057. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime