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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003065 through 18771 annotations produced 1 hits



(CG2150):

Annotation Number : CG2150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003065
Gbrowse : chr3R:27589025-27590488 (-) // 100.0 //
Probeset : 1636676_at
Accessions : protein= NP_651892;, nucleotide= NM_143635;
FlyMine data for FBgn0003065.
BDGP gene expression has embryonic in situ data for CG2150: 9 pix of staining in 10 body parts.
VDRC has 1 RNAi stocks for FBgn0003065 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.70None
Head10 ± 03 of 4 1.00None
Eye6 ± 20 of 4 0.64None
Thoracicoabdominal ganglion7 ± 00 of 4 0.70None
Salivary gland26 ± 61 of 4 2.58None
Crop15 ± 30 of 4 1.50None
Midgut6 ± 20 of 4 0.60None
Tubule9 ± 00 of 4 0.90None
Hindgut9 ± 10 of 4 1.00None
Heart4 ± 10 of 4 0.40None
Fat body24 ± 93 of 4 2.41Up
Ovary5 ± 10 of 4 0.60None
Testis5 ± 10 of 4 0.60None
Male accessory glands13 ± 32 of 4 1.30None
Virgin spermatheca12 ± 12 of 4 1.22None
Mated spermatheca14 ± 23 of 4 1.44None
Adult carcass17 ± 30 of 4 1.70None
Larval CNS12 ± 44 of 4 1.19None
Larval Salivary gland18 ± 21 of 4 1.78None
Larval midgut15 ± 10 of 4 1.50None
Larval tubule10 ± 10 of 4 1.10None
Larval hindgut9 ± 03 of 4 0.95None
Larval fat body12 ± 40 of 4 1.20None
Larval trachea9 ± 20 of 4 0.91None
Larval carcass4 ± 10 of 4 0.48None
S2 cells (growing)7 ± 20 of 4 0.69None
Whole fly10 ± 31 of 4

Looking for FBgn0003065. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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