Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003067 through 18771 annotations produced 2 hits



Phosphoenolpyruvate carboxykinase (Pepck):

Annotation Number : CG17725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003067
Gbrowse : chr2R:14424271-14426924 (+) // 100.0 //
Probeset : 1633599_a_at
Accessions : protein= NP_523784; /// NP_725802;, nucleotide= NM_079060; /// NM_166293;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004611 // phosphoenolpyruvate carboxykinase ac
FlyMine data for FBgn0003067.
BDGP gene expression has embryonic in situ data for Pepck: 62 pix of staining in 25 body parts.
BioGrid reports that CG17725 interacts with CG30387 CG4821 CG4865 .
VDRC has 5 RNAi stocks for FBgn0003067 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 74 of 4 0.00Down
Head3367 1184 of 4 2.00Up
Eye1871 2154 of 4 1.11None
Thoracicoabdominal ganglion177 554 of 4 0.10Down
Salivary gland47 73 of 4 0.03Down
Crop142 254 of 4 0.10Down
Midgut418 524 of 4 0.20Down
Tubule3432 6374 of 4 2.00Up
Hindgut1209 1174 of 4 0.70Down
Heart5375 3344 of 4 3.20Up
Fat body5386 8584 of 4 3.20Up
Ovary39 54 of 4 0.00Down
Testis123 24 of 4 0.10Down
Male accessory glands276 314 of 4 0.20Down
Virgin spermatheca5203 2934 of 4 3.09Up
Mated spermatheca5294 1854 of 4 3.15Up
Adult carcass5580 2494 of 4 3.30Up
Larval CNS73 184 of 4 0.04Down
Larval Salivary gland1258 2464 of 4 0.75None
Larval midgut4100 2454 of 4 2.44Up
Larval tubule3283 1494 of 4 2.00Up
Larval hindgut2843 1144 of 4 1.69Up
Larval fat body6230 3744 of 4 3.70Up
Larval trachea534 474 of 4 0.32Down
Larval carcass3431 2784 of 4 2.04Up
S2 cells (growing)540 434 of 4 0.32Down
Whole fly1682 1374 of 4



/// Phosphoenolpyruvate carboxykinase (CG10924 /// Pepck):

Annotation Number : CG10924
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034356
Gbrowse : chr2R:14414936-14422155 (+) // 100.0 //
Probeset : 1634794_at
Accessions : protein= NP_001097367; /// NP_611341;, nucleotide= NM_001103897; /// NM_137497;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : 0004611 // phosphoenolpyruvate carboxykinase activity // inferred from electronic annotation /// 0004613 // phosphoenolp
FlyMine data for FBgn0034356.
BDGP gene expression has embryonic in situ data for CG10924: 40 pix of staining in 12 body parts.
BioGrid reports that CG10924 interacts with CG14061 CG30409 .
TRiP has 1 RNAi stocks for FBgn0034356 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034356 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head74 264 of 4 0.90None
Eye26 34 of 4 0.33Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland3 00 of 4 0.05Down
Crop2 00 of 4 0.00Down
Midgut161 94 of 4 2.10Up
Tubule101 54 of 4 1.30Up
Hindgut36 52 of 4 0.50None
Heart112 314 of 4 1.42None
Fat body179 464 of 4 2.28Up
Ovary2 10 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca161 494 of 4 2.05None
Mated spermatheca176 314 of 4 2.24Up
Adult carcass183 194 of 4 2.30Up
Larval CNS2 10 of 4 0.03Down
Larval Salivary gland13 40 of 4 0.17Down
Larval midgut494 424 of 4 6.27Up
Larval tubule194 204 of 4 2.50Up
Larval hindgut48 131 of 4 0.62None
Larval fat body4326 5124 of 454.90Up
Larval trachea22 44 of 4 0.29Down
Larval carcass47 73 of 4 0.61None
S2 cells (growing)6 10 of 4 0.08Down
Whole fly78 154 of 4

Looking for FBgn0003067. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime