FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003067 through 18771 annotations produced 2 hits

/// Phosphoenolpyruvate carboxykinase (CG10924 /// Pepck):

Annotation Number : CG10924
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034356
Gbrowse : chr2R:14414936-14422155 (+) // 100.0 //
Probeset : 1634794_at
Accessions : protein= NP_001097367; /// NP_611341;, nucleotide= NM_001103897; /// NM_137497;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : 0004611 // phosphoenolpyruvate carboxykinase activity // inferred from electronic annotation /// 0004613 // phosphoenolp
FlyMine data for FBgn0034356.
BDGP gene expression has embryonic in situ data for CG10924: 40 pix of staining in 12 body parts.
BioGrid reports that CG10924 interacts with CG14061 CG30409 .
TRiP has 1 RNAi stocks for FBgn0034356 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034356 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.00	Down
Head	74 ± 26	4 of 4	0.90	None
Eye	26 ± 3	4 of 4	0.33	Down
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.00	Down
Salivary gland	3 ± 0	0 of 4	0.05	Down
Crop	2 ± 0	0 of 4	0.00	Down
Midgut	161 ± 9	4 of 4	2.10	Up
Tubule	101 ± 5	4 of 4	1.30	Up
Hindgut	36 ± 5	2 of 4	0.50	None
Heart	112 ± 31	4 of 4	1.42	None
Fat body	179 ± 46	4 of 4	2.28	Up
Ovary	2 ± 1	0 of 4	0.00	Down
Testis	0 ± 0	0 of 4	0.00	Down
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	161 ± 49	4 of 4	2.05	None
Mated spermatheca	176 ± 31	4 of 4	2.24	Up
Adult carcass	183 ± 19	4 of 4	2.30	Up
Larval CNS	2 ± 1	0 of 4	0.03	Down
Larval Salivary gland	13 ± 4	0 of 4	0.17	Down
Larval midgut	494 ± 42	4 of 4	6.27	Up
Larval tubule	194 ± 20	4 of 4	2.50	Up
Larval hindgut	48 ± 13	1 of 4	0.62	None
Larval fat body	4326 ± 512	4 of 4	54.90	Up
Larval trachea	22 ± 4	4 of 4	0.29	Down
Larval carcass	47 ± 7	3 of 4	0.61	None
S2 cells (growing)	6 ± 1	0 of 4	0.08	Down
Whole fly	78 ± 15	4 of 4

Phosphoenolpyruvate carboxykinase (Pepck):

Annotation Number : CG17725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003067
Gbrowse : chr2R:14424271-14426924 (+) // 100.0 //
Probeset : 1633599_a_at
Accessions : protein= NP_523784; /// NP_725802;, nucleotide= NM_079060; /// NM_166293;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004611 // phosphoenolpyruvate carboxykinase ac
FlyMine data for FBgn0003067.
BDGP gene expression has embryonic in situ data for Pepck: 62 pix of staining in 25 body parts.
BioGrid reports that CG17725 interacts with CG30387 CG4821 CG4865 .
VDRC has 5 RNAi stocks for FBgn0003067 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	74 ± 7	4 of 4	0.00	Down
Head	3367 ± 118	4 of 4	2.00	Up
Eye	1871 ± 215	4 of 4	1.11	None
Thoracicoabdominal ganglion	177 ± 55	4 of 4	0.10	Down
Salivary gland	47 ± 7	3 of 4	0.03	Down
Crop	142 ± 25	4 of 4	0.10	Down
Midgut	418 ± 52	4 of 4	0.20	Down
Tubule	3432 ± 637	4 of 4	2.00	Up
Hindgut	1209 ± 117	4 of 4	0.70	Down
Heart	5375 ± 334	4 of 4	3.20	Up
Fat body	5386 ± 858	4 of 4	3.20	Up
Ovary	39 ± 5	4 of 4	0.00	Down
Testis	123 ± 2	4 of 4	0.10	Down
Male accessory glands	276 ± 31	4 of 4	0.20	Down
Virgin spermatheca	5203 ± 293	4 of 4	3.09	Up
Mated spermatheca	5294 ± 185	4 of 4	3.15	Up
Adult carcass	5580 ± 249	4 of 4	3.30	Up
Larval CNS	73 ± 18	4 of 4	0.04	Down
Larval Salivary gland	1258 ± 246	4 of 4	0.75	None
Larval midgut	4100 ± 245	4 of 4	2.44	Up
Larval tubule	3283 ± 149	4 of 4	2.00	Up
Larval hindgut	2843 ± 114	4 of 4	1.69	Up
Larval fat body	6230 ± 374	4 of 4	3.70	Up
Larval trachea	534 ± 47	4 of 4	0.32	Down
Larval carcass	3431 ± 278	4 of 4	2.04	Up
S2 cells (growing)	540 ± 43	4 of 4	0.32	Down
Whole fly	1682 ± 137	4 of 4

Looking for FBgn0003067. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720