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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003068 through 18771 annotations produced 1 hits



chrX:2579612-2586813 (+) // 100.0 // (period):

Annotation Number : CG2647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638452_at
Accessions : protein= , nucleotide= NP_525056;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0
Interpro : DNA-dependent // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutan
FlyMine data for full length.
Homophila reports that CG2647 is a close match (5e-21) to human gene FASPS;KIAA0347;PER2 (NP_073728), a gene associated with Advanced sleep phase syndrome, familial, 604348 (3).
BioGrid reports that CG2647 interacts with CG2048 CG2048 CG6721 CG2647 CG3234 CG3234 CG3234 CG3234 CG3234 CG3234 CG3234 CG3234 CG3234 CG3234 CG2048 CG3412 EG8914 EG8914 CG3234 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 ± 44 of 4 2.90Up
Head159 ± 44 of 4 4.10Up
Eye184 ± 574 of 4 4.72None
Thoracicoabdominal ganglion110 ± 64 of 4 2.80Up
Salivary gland69 ± 74 of 4 1.78Up
Crop44 ± 54 of 4 1.10None
Midgut38 ± 24 of 4 1.00None
Tubule71 ± 143 of 4 1.80Up
Hindgut48 ± 54 of 4 1.20None
Heart29 ± 14 of 4 0.76Down
Fat body38 ± 74 of 4 0.98None
Ovary20 ± 24 of 4 0.50Down
Testis11 ± 02 of 4 0.30Down
Male accessory glands26 ± 31 of 4 0.70Down
Virgin spermatheca30 ± 04 of 4 0.79None
Mated spermatheca27 ± 13 of 4 0.71Down
Adult carcass54 ± 54 of 4 1.40None
Larval CNS30 ± 24 of 4 0.79Down
Larval Salivary gland12 ± 11 of 4 0.33Down
Larval midgut19 ± 10 of 4 0.50Down
Larval tubule7 ± 10 of 4 0.20Down
Larval hindgut3 ± 10 of 4 0.10Down
Larval fat body18 ± 30 of 4 0.50Down
Larval trachea19 ± 84 of 4 0.49Down
Larval carcass7 ± 20 of 4 0.18Down
S2 cells (growing)23 ± 04 of 4 0.59Down
Whole fly39 ± 24 of 4

Looking for FBgn0003068. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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