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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003074 through 18771 annotations produced 1 hits



glucose phosphate isomerase (Pgi):

Annotation Number : CG8251
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003074
Gbrowse : chr2R:4798406-4801631 (-) // 100.0 //
Probeset : 1638550_s_at
Accessions : protein= NP_523663; /// NP_724723; /// NP_724724;, nucleotide= NM_078939; /// NM_165635; /// NM_165636;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0004347 // glucose-6-phosphate isomerase activity // inferred from mutant phenotype /// 0004347 // glucose-6-phosphate i
FlyMine data for FBgn0003074.
BDGP gene expression has embryonic in situ data for Pgi: 11 pix of staining in 6 body parts.
Homophila reports that CG8251 is a close match (0) to human gene GPI (NP_000166), a gene associated with Hemolytic anemia due to glucosephosphate isomerase deficiency (3);Hydrops fetalis, one form (1).
VDRC has 3 RNAi stocks for FBgn0003074 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1150 284 of 4 0.80None
Head1737 694 of 4 1.20Up
Eye1227 614 of 4 0.86None
Thoracicoabdominal ganglion1244 174 of 4 0.90None
Salivary gland4189 1754 of 4 2.94Up
Crop2315 794 of 4 1.60Up
Midgut1200 614 of 4 0.80None
Tubule3287 2054 of 4 2.30Up
Hindgut2419 254 of 4 1.70Up
Heart2112 674 of 4 1.48Up
Fat body2778 2934 of 4 1.95Up
Ovary866 84 of 4 0.60Down
Testis748 364 of 4 0.50Down
Male accessory glands445 244 of 4 0.30Down
Virgin spermatheca4077 1694 of 4 2.86Up
Mated spermatheca3391 1854 of 4 2.38Up
Adult carcass2963 1204 of 4 2.10Up
Larval CNS1405 1284 of 4 0.99None
Larval Salivary gland1367 514 of 4 0.96None
Larval midgut517 484 of 4 0.36Down
Larval tubule824 544 of 4 0.60Down
Larval hindgut697 144 of 4 0.49Down
Larval fat body1620 1764 of 4 1.10None
Larval trachea649 564 of 4 0.46Down
Larval carcass3817 3854 of 4 2.68Up
S2 cells (growing)651 64 of 4 0.46Down
Whole fly1425 884 of 4

Looking for FBgn0003074. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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