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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003076 through 18771 annotations produced 1 hits



Phosphogluconate mutase (Pgm):

Annotation Number : CG5165
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003076
Gbrowse : chr3L:16119154-16121696 (-) // 100.0 //
Probeset : 1633803_at
Accessions : protein= NP_524675;, nucleotide= NM_079936;
Interpro : "0000287 // magnesium ion binding // inferred from electronic annotation /// 0004614 // phosphoglucomutase activity // i
FlyMine data for FBgn0003076.
BioGrid reports that CG5165 interacts with CG6196 CG7352 .
TRiP has 1 RNAi stocks for FBgn0003076 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003076 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain361 74 of 4 0.40Down
Head1182 534 of 4 1.20Up
Eye1080 634 of 4 1.14None
Thoracicoabdominal ganglion359 84 of 4 0.40Down
Salivary gland687 224 of 4 0.72Down
Crop799 114 of 4 0.80None
Midgut208 134 of 4 0.20Down
Tubule4089 1754 of 4 4.30Up
Hindgut921 124 of 4 1.00None
Heart2727 2294 of 4 2.87Up
Fat body4068 5114 of 4 4.29Up
Ovary443 84 of 4 0.50Down
Testis38 24 of 4 0.00Down
Male accessory glands201 144 of 4 0.20Down
Virgin spermatheca4744 1654 of 4 5.00Up
Mated spermatheca4307 2154 of 4 4.54Up
Adult carcass2954 214 of 4 3.10Up
Larval CNS640 1164 of 4 0.67Down
Larval Salivary gland446 214 of 4 0.47Down
Larval midgut139 74 of 4 0.15Down
Larval tubule1314 1064 of 4 1.40Up
Larval hindgut298 154 of 4 0.31Down
Larval fat body677 1254 of 4 0.70None
Larval trachea263 474 of 4 0.28Down
Larval carcass2782 1924 of 4 2.93Up
S2 cells (growing)437 144 of 4 0.46Down
Whole fly949 584 of 4

Looking for FBgn0003076. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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