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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003086 through 18771 annotations produced 1 hits



gland specific gene (Pig1):

Annotation Number : CG10790
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003086
Gbrowse : chrX:3142632-3143322 (-) // 99.28 //
Probeset : 1628633_at
Accessions : protein= NP_476677;, nucleotide= NM_057329;
FlyMine data for FBgn0003086.
VDRC has 1 RNAi stocks for FBgn0003086 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.50None
Head1 00 of 4 0.60None
Eye3 10 of 4 1.66None
Thoracicoabdominal ganglion2 10 of 4 1.20None
Salivary gland19 30 of 4 8.54Up
Crop5 00 of 4 2.20Up
Midgut6 20 of 4 2.60None
Tubule4 10 of 4 2.10None
Hindgut6 10 of 4 2.60None
Heart4 10 of 4 1.85None
Fat body5 10 of 4 2.52Up
Ovary3 00 of 4 1.60None
Testis1 00 of 4 0.60None
Male accessory glands7 30 of 4 3.10None
Virgin spermatheca7 10 of 4 3.00Up
Mated spermatheca6 10 of 4 2.56None
Adult carcass2 00 of 4 1.00None
Larval CNS4 20 of 4 1.86None
Larval Salivary gland9350 3904 of 44021.74Up
Larval midgut11 10 of 4 5.09Up
Larval tubule2 00 of 4 0.90None
Larval hindgut4 10 of 4 1.83None
Larval fat body15 61 of 4 6.70None
Larval trachea17 231 of 4 7.69None
Larval carcass3 20 of 4 1.45None
S2 cells (growing)1 00 of 4 0.75None
Whole fly2 00 of 4

Looking for FBgn0003086. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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