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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003087 through 18771 annotations produced 1 hits



pimples (pim):

Annotation Number : CG5052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003087
Gbrowse : chr2L:10362976-10364105 (+) // 100.0 //
Probeset : 1634209_at
Accessions : protein= NP_476678;, nucleotide= NM_057330;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 000
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0003087.
BioGrid reports that CG5052 interacts with CG7231 CG4274 .
VDRC has 3 RNAi stocks for FBgn0003087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.00Down
Head11 11 of 4 0.00Down
Eye14 14 of 4 0.03Down
Thoracicoabdominal ganglion5 10 of 4 0.00Down
Salivary gland13 30 of 4 0.03Down
Crop14 21 of 4 0.00Down
Midgut7 10 of 4 0.00Down
Tubule5 20 of 4 0.00Down
Hindgut8 11 of 4 0.00Down
Heart5 02 of 4 0.01Down
Fat body10 40 of 4 0.02Down
Ovary1188 274 of 4 2.50Up
Testis289 44 of 4 0.60Down
Male accessory glands10 10 of 4 0.00Down
Virgin spermatheca10 10 of 4 0.02Down
Mated spermatheca9 20 of 4 0.02Down
Adult carcass20 31 of 4 0.00Down
Larval CNS305 124 of 4 0.64Down
Larval Salivary gland19 33 of 4 0.04Down
Larval midgut13 10 of 4 0.03Down
Larval tubule6 10 of 4 0.00Down
Larval hindgut20 14 of 4 0.04Down
Larval fat body68 263 of 4 0.10Down
Larval trachea109 54 of 4 0.23Down
Larval carcass44 14 of 4 0.09Down
S2 cells (growing)164 54 of 4 0.34Down
Whole fly476 294 of 4

Looking for FBgn0003087. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime