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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003114 through 18771 annotations produced 1 hits



plutonium (plu):

Annotation Number : CG9183
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003114
Gbrowse : chr2R:16150462-16151224 (-) // 100.0 //
Probeset : 1632814_at
Accessions : protein= NP_476683;, nucleotide= NM_057335;
Interpro : 0003677 // DNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical intera
FlyMine data for FBgn0003114.
BioGrid reports that CG9183 interacts with CG3510 CG5272 CG1034 CG14119 CG7296 CG32381 CG15043 CG15676 CG15861 CG9046 CG14534 CG2948 CG17508 CG5708 CG13510 CG3629 CG13806 CG7948 CG5568 CG15218 CG31811 CG8667 CG18273 CG7281 CG3938 CG6521 CG5009 CG11486 CG13900 CG17964 CG32169 CG1765 CG18745 CG11525 CG4710 CG8181 .
TRiP has 1 RNAi stocks for FBgn0003114 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003114 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 01 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland10 ± 31 of 4 0.05Down
Crop5 ± 10 of 4 0.00Down
Midgut5 ± 00 of 4 0.00Down
Tubule8 ± 40 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart3 ± 00 of 4 0.01Down
Fat body3 ± 20 of 4 0.02Down
Ovary415 ± 124 of 4 1.90Up
Testis9 ± 14 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca8 ± 11 of 4 0.04Down
Mated spermatheca8 ± 03 of 4 0.04Down
Adult carcass14 ± 31 of 4 0.10Down
Larval CNS3 ± 00 of 4 0.02Down
Larval Salivary gland7 ± 11 of 4 0.03Down
Larval midgut7 ± 22 of 4 0.04Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut4 ± 11 of 4 0.02Down
Larval fat body7 ± 10 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass5 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly222 ± 24 of 4

Looking for FBgn0003114. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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