FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003116 through 18771 annotations produced 1 hits

prune (pn):

Annotation Number : CG3461
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003116
Gbrowse : chrX:2075126-2076972 (+) // 100.0 //
Probeset : 1637479_at
Accessions : protein= NP_476684;, nucleotide= NM_057336;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0016462 // pyrophosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred
FlyMine data for FBgn0003116.
BDGP gene expression has embryonic in situ data for pn: 4 pix of staining in 1 body parts.
BioGrid reports that CG3461 interacts with CG7387 .
VDRC has 1 RNAi stocks for FBgn0003116 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	93 ± 4	4 of 4	1.10	None
Head	108 ± 4	4 of 4	1.30	Up
Eye	173 ± 10	4 of 4	2.08	Up
Thoracicoabdominal ganglion	117 ± 4	4 of 4	1.40	Up
Salivary gland	62 ± 6	4 of 4	0.75	Down
Crop	45 ± 2	4 of 4	0.50	Down
Midgut	59 ± 4	4 of 4	0.70	Down
Tubule	89 ± 4	4 of 4	1.10	None
Hindgut	35 ± 1	4 of 4	0.40	Down
Heart	208 ± 4	4 of 4	2.51	Up
Fat body	414 ± 18	4 of 4	4.97	Up
Ovary	102 ± 3	4 of 4	1.20	Up
Testis	59 ± 3	4 of 4	0.70	Down
Male accessory glands	48 ± 6	4 of 4	0.60	Down
Virgin spermatheca	535 ± 21	4 of 4	6.43	Up
Mated spermatheca	337 ± 27	4 of 4	4.06	Up
Adult carcass	185 ± 9	4 of 4	2.20	Up
Larval CNS	49 ± 3	4 of 4	0.59	Down
Larval Salivary gland	32 ± 2	4 of 4	0.39	Down
Larval midgut	43 ± 1	4 of 4	0.53	Down
Larval tubule	64 ± 0	4 of 4	0.80	Down
Larval hindgut	42 ± 3	4 of 4	0.51	Down
Larval fat body	117 ± 9	4 of 4	1.40	Up
Larval trachea	34 ± 3	4 of 4	0.41	Down
Larval carcass	45 ± 2	4 of 4	0.54	Down
S2 cells (growing)	43 ± 2	4 of 4	0.52	Down
Whole fly	83 ± 3	4 of 4

Looking for FBgn0003116. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720