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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003118 through 18771 annotations produced 2 hits



pointed (pnt):

Annotation Number : CG17077
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003118
Gbrowse : chr3R:19116825-19171884 (-) // 100.0 //
Probeset : 1630010_a_at
Accessions : protein= NP_524461; /// NP_732857; /// NP_732858;, nucleotide= NM_079737; /// NM_170070; /// NM_170651;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype /// 0006916 // anti-apoptosis // inferred from genetic interaction /// 000
FlyMine data for FBgn0003118.
Homophila reports that CG17077 is a close match (4e-12) to human gene ETV6;TEL (NP_001978), a gene associated with Leukemia, acute myeloid, somatic, 601626 (3).
BioGrid reports that CG17077 interacts with CG8189 CG3166 CG3166 CG3166 CG3166 CG3954 CG12676 CG2275 CG2275 CG2845 CG2845 CG2845 CG5529 CG4209 CG4654 CG15793 CG6376 CG3936 CG3936 CG9842 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG5123 CG1945 CG17228 CG18085 CG18497 CG1395 CG31774 CG6817 CG5772 .
TRiP has 2 RNAi stocks for FBgn0003118 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 1.20None
Head21 ± 24 of 4 1.30None
Eye20 ± 24 of 4 1.25None
Thoracicoabdominal ganglion21 ± 04 of 4 1.30None
Salivary gland6 ± 20 of 4 0.38Down
Crop59 ± 34 of 4 3.60Up
Midgut42 ± 24 of 4 2.60Up
Tubule24 ± 33 of 4 1.50Up
Hindgut15 ± 04 of 4 0.90None
Heart75 ± 74 of 4 4.56Up
Fat body14 ± 64 of 4 0.90None
Ovary13 ± 14 of 4 0.80None
Testis4 ± 10 of 4 0.30Down
Male accessory glands17 ± 13 of 4 1.10None
Virgin spermatheca9 ± 02 of 4 0.60None
Mated spermatheca10 ± 32 of 4 0.63None
Adult carcass18 ± 04 of 4 1.10None
Larval CNS68 ± 104 of 4 4.17Up
Larval Salivary gland4 ± 20 of 4 0.29Down
Larval midgut47 ± 34 of 4 2.88Up
Larval tubule23 ± 14 of 4 1.40None
Larval hindgut26 ± 44 of 4 1.62None
Larval fat body18 ± 43 of 4 1.10None
Larval trachea43 ± 64 of 4 2.63Up
Larval carcass21 ± 14 of 4 1.33None
S2 cells (growing)1108 ± 324 of 467.26Up
Whole fly16 ± 24 of 4



ATPase coupling factor 6 /// pointed (ATPsyn-Cf6 /// pnt):

Annotation Number : CG4412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016119
Gbrowse : chr3R:19180976-19181782 (-) // 99.27 //
Probeset : 1641328_at
Accessions : protein= NP_477194;, nucleotide= NM_057846;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation //
Interpro : engulfment // inferred from mutant phenotype /// 0006916 // anti-apoptosis // inferred from genetic interaction /// 000
FlyMine data for FBgn0016119.
BioGrid reports that CG4412 interacts with CG9900 .
VDRC has 2 RNAi stocks for FBgn0016119 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1884 ± 454 of 4 0.90Down
Head2531 ± 1834 of 4 1.10None
Eye3012 ± 1014 of 4 1.37Up
Thoracicoabdominal ganglion2162 ± 864 of 4 1.00None
Salivary gland4667 ± 924 of 4 2.12Up
Crop2270 ± 1304 of 4 1.00None
Midgut2850 ± 1024 of 4 1.30Up
Tubule2913 ± 334 of 4 1.30Up
Hindgut3856 ± 1094 of 4 1.70Up
Heart3851 ± 1494 of 4 1.75Up
Fat body3526 ± 1854 of 4 1.60Up
Ovary1267 ± 154 of 4 0.60Down
Testis542 ± 64 of 4 0.20Down
Male accessory glands1718 ± 234 of 4 0.80Down
Virgin spermatheca2998 ± 1384 of 4 1.36Up
Mated spermatheca2864 ± 694 of 4 1.30Up
Adult carcass4402 ± 1584 of 4 2.00Up
Larval CNS1425 ± 1014 of 4 0.65Down
Larval Salivary gland2544 ± 1444 of 4 1.15None
Larval midgut2210 ± 554 of 4 1.00None
Larval tubule1905 ± 1484 of 4 0.90None
Larval hindgut2855 ± 794 of 4 1.29Up
Larval fat body828 ± 684 of 4 0.40Down
Larval trachea2328 ± 1154 of 4 1.06None
Larval carcass3002 ± 2574 of 4 1.36Up
S2 cells (growing)1020 ± 284 of 4 0.46Down
Whole fly2205 ± 864 of 4

Looking for FBgn0003118. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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