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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003130 through 18771 annotations produced 1 hits



chr2R:11714197-11722280 (-) // 100.0 // (pox-neuro):

Annotation Number : CG8246
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632977_at
Accessions : protein= , nucleotide= NP_476686;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8246 is a close match (2e-27) to human gene KPD;MODY9;PAX4 (NP_006184), a gene associated with Diabetes mellitus, type 2, 125853 (3);Maturity-onset diabetes of the young, type IX, 612225 (3).
BioGrid reports that CG8246 interacts with CG9933 CG10798 CG3938 CG11049 CG11049 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 34 of 4 4.50Up
Head12 ± 13 of 4 1.60None
Eye3 ± 10 of 4 0.42None
Thoracicoabdominal ganglion10 ± 12 of 4 1.40None
Salivary gland22 ± 51 of 4 3.03None
Crop6 ± 20 of 4 0.80None
Midgut14 ± 10 of 4 2.00Up
Tubule18 ± 22 of 4 2.40Up
Hindgut4 ± 10 of 4 0.70None
Heart4 ± 10 of 4 0.61None
Fat body12 ± 22 of 4 1.65Up
Ovary4 ± 00 of 4 0.60Down
Testis4 ± 10 of 4 0.60None
Male accessory glands10 ± 22 of 4 1.40None
Virgin spermatheca7 ± 10 of 4 0.97None
Mated spermatheca9 ± 00 of 4 1.22None
Adult carcass12 ± 40 of 4 1.70None
Larval CNS26 ± 04 of 4 3.56Up
Larval Salivary gland9 ± 32 of 4 1.27None
Larval midgut5 ± 20 of 4 0.77None
Larval tubule7 ± 10 of 4 1.00None
Larval hindgut6 ± 10 of 4 0.80None
Larval fat body5 ± 21 of 4 0.80None
Larval trachea16 ± 14 of 4 2.21Up
Larval carcass46 ± 54 of 4 6.26Up
S2 cells (growing)5 ± 10 of 4 0.69None
Whole fly7 ± 01 of 4

Looking for FBgn0003130. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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