FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003130 through 18771 annotations produced 1 hits

chr2R:11714197-11722280 (-) // 100.0 // (pox-neuro):

Annotation Number : CG8246
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632977_at
Accessions : protein= , nucleotide= NP_476686;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8246 is a close match (2e-27) to human gene KPD;MODY9;PAX4 (NP_006184), a gene associated with Diabetes mellitus, type 2, 125853 (3);Maturity-onset diabetes of the young, type IX, 612225 (3).
BioGrid reports that CG8246 interacts with CG9933 CG10798 CG3938 CG11049 CG11049 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	34 ± 3	4 of 4	4.50	Up
Head	12 ± 1	3 of 4	1.60	None
Eye	3 ± 1	0 of 4	0.42	None
Thoracicoabdominal ganglion	10 ± 1	2 of 4	1.40	None
Salivary gland	22 ± 5	1 of 4	3.03	None
Crop	6 ± 2	0 of 4	0.80	None
Midgut	14 ± 1	0 of 4	2.00	Up
Tubule	18 ± 2	2 of 4	2.40	Up
Hindgut	4 ± 1	0 of 4	0.70	None
Heart	4 ± 1	0 of 4	0.61	None
Fat body	12 ± 2	2 of 4	1.65	Up
Ovary	4 ± 0	0 of 4	0.60	Down
Testis	4 ± 1	0 of 4	0.60	None
Male accessory glands	10 ± 2	2 of 4	1.40	None
Virgin spermatheca	7 ± 1	0 of 4	0.97	None
Mated spermatheca	9 ± 0	0 of 4	1.22	None
Adult carcass	12 ± 4	0 of 4	1.70	None
Larval CNS	26 ± 0	4 of 4	3.56	Up
Larval Salivary gland	9 ± 3	2 of 4	1.27	None
Larval midgut	5 ± 2	0 of 4	0.77	None
Larval tubule	7 ± 1	0 of 4	1.00	None
Larval hindgut	6 ± 1	0 of 4	0.80	None
Larval fat body	5 ± 2	1 of 4	0.80	None
Larval trachea	16 ± 1	4 of 4	2.21	Up
Larval carcass	46 ± 5	4 of 4	6.26	Up
S2 cells (growing)	5 ± 1	0 of 4	0.69	None
Whole fly	7 ± 0	1 of 4

Looking for FBgn0003130. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720