FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003138 through 18771 annotations produced 2 hits

protein tyrosine phosphatase (Ptp61F):

Annotation Number : CG9181
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003138
Gbrowse : chr3L:1343607-1350665 (-) // 100.0 //
Probeset : 1638438_a_at
Accessions : protein= NP_476687; /// NP_476688; /// NP_728600; /// NP_728601;, nucleotide= NM_057339; /// NM_057340; /// NM_167874; /// NM_167875;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0003138.
BDGP gene expression has embryonic in situ data for Ptp61F: 18 pix of staining in 12 body parts.
Homophila reports that CG9181 is a close match (1e-15) to human gene PTPG1;PTPN12 (NP_002826), a gene associated with Colon cancer (3).
BioGrid reports that CG9181 interacts with CG3727 .
TRiP has 1 RNAi stocks for FBgn0003138 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003138 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	138 ± 7	4 of 4	0.40	Down
Head	100 ± 7	4 of 4	0.30	Down
Eye	151 ± 8	4 of 4	0.42	Down
Thoracicoabdominal ganglion	105 ± 7	4 of 4	0.30	Down
Salivary gland	138 ± 3	4 of 4	0.38	Down
Crop	150 ± 9	4 of 4	0.40	Down
Midgut	136 ± 3	4 of 4	0.40	Down
Tubule	81 ± 4	4 of 4	0.20	Down
Hindgut	120 ± 6	4 of 4	0.30	Down
Heart	128 ± 4	4 of 4	0.36	Down
Fat body	91 ± 19	4 of 4	0.25	Down
Ovary	928 ± 12	4 of 4	2.60	Up
Testis	92 ± 7	4 of 4	0.30	Down
Male accessory glands	164 ± 7	4 of 4	0.50	Down
Virgin spermatheca	558 ± 46	4 of 4	1.55	Up
Mated spermatheca	488 ± 59	4 of 4	1.36	None
Adult carcass	92 ± 8	4 of 4	0.30	Down
Larval CNS	225 ± 9	4 of 4	0.63	Down
Larval Salivary gland	117 ± 8	4 of 4	0.33	Down
Larval midgut	131 ± 5	4 of 4	0.37	Down
Larval tubule	135 ± 5	4 of 4	0.40	Down
Larval hindgut	170 ± 11	4 of 4	0.47	Down
Larval fat body	84 ± 6	4 of 4	0.20	Down
Larval trachea	246 ± 22	4 of 4	0.68	Down
Larval carcass	135 ± 10	4 of 4	0.38	Down
S2 cells (growing)	239 ± 9	4 of 4	0.67	Down
Whole fly	359 ± 11	4 of 4

protein tyrosine phosphatase (Ptp61F):

Annotation Number : CG9181
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003138
Gbrowse : chr3L:1342489-1424979 (-) // 100.0 //
Probeset : 1635729_a_at
Accessions : protein= NP_476687; /// NP_476688; /// NP_728600; /// NP_728601;, nucleotide= NM_057339; /// NM_057340; /// NM_167874; /// NM_167875;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0003138.
BDGP gene expression has embryonic in situ data for Ptp61F: 18 pix of staining in 12 body parts.
Homophila reports that CG9181 is a close match (1e-15) to human gene PTPG1;PTPN12 (NP_002826), a gene associated with Colon cancer (3).
BioGrid reports that CG9181 interacts with CG3727 .
TRiP has 1 RNAi stocks for FBgn0003138 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003138 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	42 ± 0	4 of 4	0.40	Down
Head	34 ± 4	4 of 4	0.30	Down
Eye	59 ± 4	4 of 4	0.54	Down
Thoracicoabdominal ganglion	35 ± 5	4 of 4	0.30	Down
Salivary gland	40 ± 5	4 of 4	0.36	Down
Crop	61 ± 5	4 of 4	0.60	Down
Midgut	48 ± 4	4 of 4	0.40	Down
Tubule	33 ± 3	4 of 4	0.30	Down
Hindgut	47 ± 1	4 of 4	0.40	Down
Heart	46 ± 1	4 of 4	0.42	Down
Fat body	36 ± 7	4 of 4	0.33	Down
Ovary	231 ± 8	4 of 4	2.10	Up
Testis	232 ± 9	4 of 4	2.10	Up
Male accessory glands	79 ± 4	4 of 4	0.70	Down
Virgin spermatheca	53 ± 3	4 of 4	0.48	Down
Mated spermatheca	59 ± 3	4 of 4	0.54	Down
Adult carcass	46 ± 5	4 of 4	0.40	Down
Larval CNS	83 ± 4	4 of 4	0.76	Down
Larval Salivary gland	51 ± 2	4 of 4	0.46	Down
Larval midgut	59 ± 4	4 of 4	0.54	Down
Larval tubule	46 ± 2	4 of 4	0.40	Down
Larval hindgut	59 ± 2	4 of 4	0.53	Down
Larval fat body	60 ± 9	4 of 4	0.50	Down
Larval trachea	69 ± 10	4 of 4	0.63	Down
Larval carcass	60 ± 4	4 of 4	0.55	Down
S2 cells (growing)	202 ± 3	4 of 4	1.83	Up
Whole fly	110 ± 7	4 of 4

Looking for FBgn0003138. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720