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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003139 through 18771 annotations produced 1 hits



Protein phosphatase V (PpV):

Annotation Number : CG12217
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003139
Gbrowse : chrX:6265091-6266874 (-) // 100.0 //
Probeset : 1636945_at
Accessions : protein= NP_511061;, nucleotide= NM_078506;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 000573
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0003139.
BioGrid reports that CG12217 interacts with CG6416 .
TRiP has 1 RNAi stocks for FBgn0003139 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003139 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 124 of 4 0.90None
Head147 54 of 4 0.70Down
Eye91 54 of 4 0.45Down
Thoracicoabdominal ganglion158 14 of 4 0.80Down
Salivary gland184 104 of 4 0.91None
Crop208 154 of 4 1.00None
Midgut195 84 of 4 1.00None
Tubule211 24 of 4 1.00Up
Hindgut184 34 of 4 0.90Down
Heart112 74 of 4 0.55Down
Fat body146 144 of 4 0.72Down
Ovary417 194 of 4 2.10Up
Testis33 14 of 4 0.20Down
Male accessory glands112 74 of 4 0.60Down
Virgin spermatheca133 64 of 4 0.66Down
Mated spermatheca170 74 of 4 0.84Down
Adult carcass121 54 of 4 0.60Down
Larval CNS314 94 of 4 1.55Up
Larval Salivary gland342 104 of 4 1.69Up
Larval midgut172 34 of 4 0.85Down
Larval tubule238 74 of 4 1.20Up
Larval hindgut256 24 of 4 1.26Up
Larval fat body148 104 of 4 0.70Down
Larval trachea284 404 of 4 1.40Up
Larval carcass304 74 of 4 1.50Up
S2 cells (growing)255 134 of 4 1.26Up
Whole fly202 34 of 4

Looking for FBgn0003139. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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