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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003141 through 18771 annotations produced 1 hits

purple (pr):

Annotation Number : CG16784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003141
Gbrowse : chr2L:20073716-20075479 (-) // 100.0 //
Probeset : 1637036_s_at
Accessions : protein= NP_599101; /// NP_724244;, nucleotide= NM_134274; /// NM_165319;
Interpro : 0003874 // 6-pyruvoyltetrahydropterin synthase activity // inferred from sequence or structural similarity /// 0003874 /
FlyMine data for FBgn0003141.
Homophila reports that CG16784 is a close match (1e-39) to human gene PTS (NP_000308), a gene associated with Phenylketonuria due to PTS deficiency (3).
BioGrid reports that CG16784 interacts with CG16784 CG6279 CG3365 CG6222 .
VDRC has 1 RNAi stocks for FBgn0003141 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 34 of 4 0.70Down
Head521 234 of 4 2.20Up
Eye1077 484 of 4 4.46Up
Thoracicoabdominal ganglion183 74 of 4 0.80Down
Salivary gland417 64 of 4 1.73Up
Crop245 24 of 4 1.00None
Midgut173 54 of 4 0.70Down
Tubule157 64 of 4 0.60Down
Hindgut107 14 of 4 0.40Down
Heart264 64 of 4 1.09None
Fat body408 554 of 4 1.69Up
Ovary365 114 of 4 1.50Up
Testis63 34 of 4 0.30Down
Male accessory glands567 214 of 4 2.30Up
Virgin spermatheca500 144 of 4 2.07Up
Mated spermatheca510 224 of 4 2.11Up
Adult carcass288 104 of 4 1.20None
Larval CNS278 364 of 4 1.15None
Larval Salivary gland407 214 of 4 1.69Up
Larval midgut125 74 of 4 0.52Down
Larval tubule169 54 of 4 0.70Down
Larval hindgut105 54 of 4 0.44Down
Larval fat body1181 1704 of 4 4.90Up
Larval trachea316 304 of 4 1.31Up
Larval carcass213 74 of 4 0.88None
S2 cells (growing)120 34 of 4 0.50Down
Whole fly241 184 of 4

Looking for FBgn0003141. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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